rna-modifications

There are 12 repositories under rna-modifications topic.

  • xpore

    GoekeLab/xpore

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Language:Python138914823

  • tleonardi/nanocompore

    RNA modifications detection from Nanopore dRNA-Seq data

    Language:Python80915712

  • OpenOmics/modr

    An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

    Language:Python5121

  • JiayiLi21/NanoML-5moU

    NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data

    Language:Jupyter Notebook4110

  • mevers/RNAModR

    Repository for the R package RNAModR

    Language:R3292

  • y9c/cpup

    Convert mpileup format to base count tsv table

    Language:C++3110

  • rnabioco/tRNA004

    Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

    Language:Python22121

  • FelixErnst/Modstrings

    :package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

    Language:R1201

  • GilbertLabUCSF/Decitabine-treatment

    A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation

    Language:Jupyter Notebook11100

  • harrlol/hamrtools

    handful of tools that might be needed before or after HAMR

    Language:R1100

  • monimaanam/Modomics_Decoder

    Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.

    Language:Python1100

  • harrlol/hamrbox

    A bundle of HAMRtools for High-throughput RNA modification prediction and analysis

    Language:R01