tleonardi/nanocompore

Issues

• ref kmer and position of modification

  #230 opened 6 months ago by keenhl
  3

• Direction of change in methylation

  #229 opened 6 months ago by keenhl
  1

• SampComp error

  #199 opened 3 years ago by rania-o
  5

• eventalign_collapse error

  #203 opened 2 years ago by rezarahman12
  9

• sharkfin plot too many data points and difficult to visualize

  #228 opened 8 months ago by Rohit-Satyam
  1

• Parameters recommendation to analyse SARS-CoV-2 data generated us Oxford Nanopore DRS protocol

  #226 opened 8 months ago by Rohit-Satyam
  2

• numpy' has no attribute 'float'.

  #225 opened 9 months ago by Rohit-Satyam
  3

• db type is dbm.gnu, but the module is not available

  #224 opened 10 months ago by villegmb
  4

• Steps to make Nanocompore Work

  #223 opened a year ago by Rohit-Satyam
  1

• Nanocompore SampComp stuck at 0%

  #222 opened a year ago by sidizhao
  8

• SystemError: null argument to internal routine

  #221 opened a year ago by kwonej0617
  7

• About SK1 transcriptome reference and m6A sites for Yeast

  #202 opened 2 years ago by Derryxu
  1

• Problems with save_to_bed. And questions with bed file annotation

  #220 opened a year ago by XqKang
  1

• nanocompore-sampcomp-References found in index: 0

  #218 opened a year ago by XqKang
  2

• nanocompore sampcomp output question.

  #219 opened a year ago by fgfrost
  5

• Where is the fold change value

  #204 opened a year ago by JeremyQuo
  3

• dbm.error: db file doesn't exist; use 'c' or 'n' flag to create a new db

  #208 opened a year ago by sunsetyerin
  21

• cluster_counts interpretation

  #210 opened a year ago by sunsetyerin
  1

• Issues on reproducing the synthetic oligo results from the nanocompore paper

  #211 opened a year ago by loganylchen
  3

• nanocompore to be used for SHAPEseq data

  #213 opened a year ago by lpantano
  1

• miCLIP dataset

  #216 opened a year ago by kwonej0617
  2

• A question about the result

  #217 opened a year ago by Tomcxf
  1

• Request for demo data & getting ValueError: 'read_name' is not in list when running nanocompore eventalign_collapse with nanopolishComp data

  #212 opened a year ago by kwonej0617
  11

• returns numpy error while intsalling nanocompore on Ubuntu 22.04

  #214 opened a year ago by annapopova-scripps
  2

• Error with parsing bed file

  #176 opened 4 years ago by nemitheasura
  7

• Script for generating the "sharkfin plot of the p-values compared with Log Odds Ratio"

  #206 opened 2 years ago by sbridgett
  6

• plot position is giving an error

  #209 opened 2 years ago by Muhammad5577
  5

• 'event_l' referenced before assignment

  #200 opened 2 years ago by peaceben
  4

• SampCompDB error

  #207 opened 2 years ago by rezarahman12
  1

• The problem in the output file

  #198 opened 3 years ago by JeremyQuo
  1

• samcomp

  #205 opened 2 years ago by rezarahman12
  0

• nanocompore sampcomp defunct

  #201 opened 2 years ago by zhongzhd
  0

• The result database does not contain metadata

  #196 opened 3 years ago by ynren1020
  3

• IndexError during Eventalign_collapse

  #197 opened 3 years ago by Tomcxf
  5

• Code and data for Sup. Figure 10

  #194 opened 3 years ago by mbhall88
  2

• SampCompDB plot position error

  #193 opened 3 years ago by samir-watson
  2

• Formatting issue on docs

  #195 opened 3 years ago by mbhall88
  0

• swarmplot to visualize each replicate

  #191 opened 3 years ago by wososa
  2

• Version 1.0.3 is shown as version 1.0.2

  #182 opened 3 years ago by wososa
  1

• About nominal p-values

  #188 opened 3 years ago by wososa
  1

• About GLMM p-value peaks passing 0.01

  #187 opened 4 years ago by wososa
  2

• Is there CLI provision for transcript exclude list?

  #186 opened 4 years ago by DrOllyGomez
  1

• Dwell time scaling

  #185 opened 4 years ago by tleonardi
  0

• [File Size and Run time] Nanocompore for 4 million reads

  #174 opened 4 years ago by wososa
  12

• Modifications in DNA samples

  #166 opened 4 years ago by Stautis
  6

• SampComp output is a .dat file

  #177 opened 4 years ago by sr8510
  3

• [ERROR - MainProcess | High fraction of invalid kmers]

  #175 opened 4 years ago by wososa
  3

• Documentation website not up to date

  #173 opened 4 years ago by a-slide
  1

• Invalid kmers filtering

  #164 opened 4 years ago by tleonardi
  1

• Nanocompore gets stuck due to large amounts of data for a single transcript

  #163 opened 4 years ago by tleonardi
  0