Pinned Repositories
bedparse
Python module and CLI tool to perform operations on BED files
enrichment_strategies_course
Course on enrichment strategies for the EMBL bioinformatics wokshop
ggheatmap
Generate pretty ggplot2 heatmaps with row and column dendrograms
nanocompore
RNA modifications detection from Nanopore dRNA-Seq data
nanocompore_paper_analyses
Analyses performed for the nanocompore paper
nanocompore_pipeline
Nextflow pipeline for nanocompore analysis
scripts
Various scripts that make my everyday life easier
vault.sh
An interactive bash script that simplifies the management of gpg encrypted files
tleonardi's Repositories
tleonardi/nanocompore
RNA modifications detection from Nanopore dRNA-Seq data
tleonardi/bedparse
Python module and CLI tool to perform operations on BED files
tleonardi/nanocompore_paper_analyses
Analyses performed for the nanocompore paper
tleonardi/nanocompore_pipeline
Nextflow pipeline for nanocompore analysis
tleonardi/vault.sh
An interactive bash script that simplifies the management of gpg encrypted files
tleonardi/ggheatmap
Generate pretty ggplot2 heatmaps with row and column dendrograms
tleonardi/NanopolishComp
Python package for upstream preprocessing and downstream analysis of nanopolish
tleonardi/scripts
Various scripts that make my everyday life easier
tleonardi/tapRNAs
Pipeline for the identification of Topological Anchor Point RNAs (tapRNAs)
tleonardi/.dotfiles
tleonardi/altamisa
Alternative Python API for accessing ISA-tab files
tleonardi/bioconda-recipes
Conda recipes for the bioconda channel.
tleonardi/bioinformatics
Tools for bioinformatics
tleonardi/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
tleonardi/debtap
A script for converting .deb packages into Arch Linux packages, focused on accuracy
tleonardi/image_analysis_in_R
Tutorial on Image analysis using R
tleonardi/intim
Interactively interface Vim with interpreters
tleonardi/notmuch-addrlookup-c
Address lookup tool for Notmuch in C using GLib and libnotmuch
tleonardi/ORF_annotate
tleonardi/pinfish
Tools to annotate genomes using long read transcriptomics data
tleonardi/poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
tleonardi/pubmed_parser
:clipboard: A Python Parser for Pubmed Open-Access XML Subset and MEDLINE XML Dataset
tleonardi/pycoqc_pipeline
Nextflow pipeline that runs pycoQC on Guppy output
tleonardi/rmd2html
Workflow that converts Rmd files in a nicely formatted html page using twitter bootstrap
tleonardi/SequenceImp
Small RNA analysis pipeline
tleonardi/simple-java-maven-app
For an introductory tutorial on how to use Jenkins to build a simple Java application with Maven.
tleonardi/singularity
Repository with my singularity recipes hosted at Singularity Hub
tleonardi/superstruct
A simple and composable way to validate data in Javascript.
tleonardi/tleonardi.github.io
tleonardi/vim-templates
create files from templates