Issues
- 1
Create small reference for fusioncatcher (chr4)
#580 opened by alanmmobbs93 - 1
- 2
- 3
Create nf-tests for "fusioninspector" module
#523 opened by nschcolnicov - 2
Create nf-tests for "vcf_collect" module
#529 opened by nschcolnicov - 1
- 2
Create nf-test for `STARFUSION_BUILD`
#579 opened by atrigila - 0
Add small test data in test-datasets
#556 opened by atrigila - 0
Create nf-tests for "starfusion": "build", "detect", and "download" modules
#527 opened by nschcolnicov - 0
Create nf-test for `FUSIONREPORT_DETECT`
#561 opened by atrigila - 1
- 0
Create nf-tests for "trim_workflow" subworkflow
#537 opened by nschcolnicov - 0
Add `ARRIBA_DOWNLOAD` references to test-datasets
#571 opened by atrigila - 0
Language server correct of arriba module
#576 opened by rannick - 1
General fixes
#544 opened by nschcolnicov - 0
Correct language server issues
#552 opened by atrigila - 4
- 0
Move local modules to nf-core/modules
#575 opened by grst - 1
- 1
Create nf-tests for "qc_workflow" subworkflow
#534 opened by nschcolnicov - 0
- 1
- 0
- 0
- 0
Create nf-test for `FUSIONREPORT_DOWNLOAD`
#560 opened by atrigila - 3
Fusion-report: make COSMIC optional
#514 opened by rannick - 0
Add authors in the changelog?
#566 opened by grst - 1
- 0
VCF generation should be optional
#513 opened by rannick - 1
- 0
- 1
- 0
Feed fusions separately to fusioninspector
#517 opened by rannick - 1
Update STAR-Fusion to 1.14.0
#549 opened by rannick - 1
Add download options
#515 opened by rannick - 2
Assess why there is two copies of "rrnatranscripts" module, one local and one from nf-core
#542 opened by nschcolnicov - 3
Create nf-tests for "rrnatranscripts" module
#526 opened by nschcolnicov - 5
Create nf-tests for "hgnc" module
#524 opened by nschcolnicov - 0
Create nf-tests for "ensembl" module
#520 opened by nschcolnicov - 1
- 1
- 0
- 1
Create nf-tests for "convert2bed" module
#519 opened by nschcolnicov - 1
new module: CTAT/SPLICING
#538 opened by matthdsm - 0
- 0
- 0
- 0
Add custom annotation to gft for IGH superlocus
#516 opened by rannick - 0
Add cicero
#512 opened by rannick - 1
Vcf contain repeated coordinates
#511 opened by rannick