/genome-mapping

Initial work to determine how to map sequences to genomes

Primary LanguagePython

Genome Mapping

This is a repo for me to explore how to map generic RNA sequences to a genome. The general idea is that to use a variety of alignment programs for each type of sequence and organism to properly create a mapping.

Dependencies

  • bedtools
  • python 2.7
    • Along with all the packages in requirements.txt
  • xsv

Usage

bin/pombe