RNAcentral/rnacentral-import-pipeline

Improve handing of expression data

Closed this issue · 1 comments

afg1 commented

Right now, the import of expression atlas gets deduplicated so genes with multiple expression experiments don't show up as such.

For example:
https://rnacentral.org/rna/URS000039D290/9606

Should show up in 31 experiments:
https://www.ebi.ac.uk/gxa/genes/ensg00000236008?bs=%7B%22homo%20sapiens%22%3A%5B%22ORGANISM_PART%22%5D%7D&ds=%7B%22kingdom%22%3A%5B%22animals%22%5D%7D#baseline

We should handle this better. Consider adding:

  • Expression table in database linking accessions to expression
  • Expression table to RNA pages
afg1 commented

This is fixed in the webcode, with a link to all experiments featuring the given gene, so this can be closed