/primerFind

Find and summarize the presence of given primers (or any subseq) within a fastq file

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

primerFind

Find and summarize the presence of given primers (or any subseq) within a fastq file

Usage

python3 primerFind.py -s <sequenceFile> -p <primerFile>

-v/--verbose - gives debug output -r/--reporting - creates report files based on hits found