Research Scientific Computing
We increase the impact of Seattle Children's biomedical research by making cutting-edge computational biology and supercomputing accessible
Pinned Repositories
.github
Mission Statement
bulk_rnaseq_fusion_nf
compareRhythms
Approaches to identify Differential Rhythmicity
cutandrun_nf
Cut&Run Alignment, QC, and Peak Calling Pipeline
IGNITE
repo to demo for 2023.11 IGNITE
mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq
Time-course analysis of scRNA-seq from iPSC motor neurons.
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nextflow_scri_config
An SCRI nextflow profile for NF-Core
rnaseq_count_nf
sarek_Aug2023
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Research Scientific Computing's Repositories
RSC-RP/.github
Mission Statement
RSC-RP/bulk_rnaseq_fusion_nf
RSC-RP/compareRhythms
Approaches to identify Differential Rhythmicity
RSC-RP/cutandrun_nf
Cut&Run Alignment, QC, and Peak Calling Pipeline
RSC-RP/IGNITE
repo to demo for 2023.11 IGNITE
RSC-RP/mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq
Time-course analysis of scRNA-seq from iPSC motor neurons.
RSC-RP/multi-package-containers
Testing building mulled containers for multi-requirement tools.
RSC-RP/nextflow_scri_config
An SCRI nextflow profile for NF-Core
RSC-RP/rnaseq_count_nf
RSC-RP/sarek_Aug2023
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
RSC-RP/configs
Config files used to define parameters specific to compute environments at different Institutions
RSC-RP/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!