#Network Analysis in R: Bridging R and Cytoscape
Covers:
Introduction to the igraph package for basic network construction.
Demonstration of methods to transfer networks from R to Cytoscape for more advanced visualisation.
Structural analysis of yeast protein interaction network, module detection and visualisation in Cytoscape.
Requires:
Cytoscape 3.2.1+ with Java 8 and the CyREST app installed
R Packages: httr, RSONIO, gplots, RCy3