RabbitBio

Pinned Repositories

RabbitBAM
Ultra-fast I/O framework for BAM files
Language:C20
RabbitFX
Language:C++9 3 02
RabbitFX-Casestudy
RabbitFX case studies
Language:C++30
RabbitKSSD
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
Language:C++9 3 01
RabbitQCPlus
A more efficient quality control tool for sequencing data
Language:C++21 6 72
RabbitSAlign
GPU Acceleration of Short Read Alignment for Heterogeneous Multicore Platforms
Language:C++3 0 00
RabbitSketch
fast sketch for DNA or normal sequence data (MinHash WeightedMinHash OrderMinHash and hyperloglog)
Language:C++3 1 00
RabbitTClust
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Language:C++41 3 123
RabbitTrim
Language:C++4 1 00
RabbitV
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures
Language:C++8 1 41

RabbitBio's Repositories

RabbitBio/RabbitTClust
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Language:C++41 3 123
RabbitBio/RabbitQCPlus
A more efficient quality control tool for sequencing data
Language:C++21 6 72
RabbitBio/RabbitFX
Language:C++9 3 02
RabbitBio/RabbitKSSD
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
Language:C++9 3 01
RabbitBio/RabbitV
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures
Language:C++8 1 41
RabbitBio/RabbitTrim
Language:C++4 1 00
RabbitBio/RabbitFX-Casestudy
RabbitFX case studies
Language:C++30
RabbitBio/RabbitSAlign
GPU Acceleration of Short Read Alignment for Heterogeneous Multicore Platforms
Language:C++3 0 00
RabbitBio/RabbitSketch
fast sketch for DNA or normal sequence data (MinHash WeightedMinHash OrderMinHash and hyperloglog)
Language:C++3 1 00
RabbitBio/RabbitBAM
Ultra-fast I/O framework for BAM files
Language:C20
RabbitBio/SWQC
An Efficient Sequencing Data Quality Control Tool on Sunway Platform
Language:C++10
RabbitBio/RabbitIO
Language:C++0 2 03
RabbitBio/RabbitMash
RabbitMash: an efficient highly optimized implementation of Mash.
Language:C++0 1 00
RabbitBio/RabbitQC
RabbitQC: high-speed scalable quality control for sequencing data.
Language:C++0 2 00
RabbitBio/RabbitQC-CCS
A quality control toolset for CCS-BAM files
0 2 00
RabbitBio/RabbitUniq
compute unique k-mer faster
Language:C++0 2 10
RabbitBio/RabbitVar
An Fast variant calling tool to detection germline and somatic variants
Language:Jupyter Notebook0 0 00
RabbitBio/RabbitBAM-QC
Efficient QC for BAM files with RabbitBAM I/O library
Language:C++
RabbitBio/RabbitBAM-SORT
Efficient BAM file sorting with RabbitBAM I/O library
Language:C++
RabbitBio/RabbitBM
Highly optimized version of ST_BarcodeMap.
Language:C++2 0
RabbitBio/RabbitFX-1
new
Language:C++0 0
RabbitBio/RabbitZ
Our aim: A streaming gzip decompressing library for biological sequences
Language:C++1 0
RabbitBio/SWBWA
BWA on Sunway platform