Pinned Repositories
16S_Analysis_Workshop
Code for 16S analysis workshop
191203_Baldridge_VLPtagging
Scripts for Larry's VLP Tagging project.
201113-Mouse-CRPS-Combined
Analyses of Lara Crock's combined mouse CRPS cohorts 1 and 2.
201129-Human-CRPS-Combined
Analysis of (5) combined human CRPS cohorts, inluding CRPS, HHC, and Biobank controls.
andrews-correlations
aPCoA
demux-htcf-snake
Snakemake for demultiplexing 16S sequencing files using QIIME1 on the cluster.
dirty-bbtools-viral-pipeline
The old, dirty bbtools pipeline up through assembly with IDBA_UD.
Hecatomb-HTCF-Snake
Snakemake and associated files for Hecatomb on HTCF
Holtz-Lim_MotherTwinInfant_Virome_BacterialMicrobiome
Publication repository for twin/mom study (bacterial and viral).
RachelRodgers's Repositories
RachelRodgers/Holtz-Lim_MotherTwinInfant_Virome_BacterialMicrobiome
Publication repository for twin/mom study (bacterial and viral).
RachelRodgers/Hecatomb-HTCF-Snake
Snakemake and associated files for Hecatomb on HTCF
RachelRodgers/16S_Analysis_Workshop
Code for 16S analysis workshop
RachelRodgers/191203_Baldridge_VLPtagging
Scripts for Larry's VLP Tagging project.
RachelRodgers/201113-Mouse-CRPS-Combined
Analyses of Lara Crock's combined mouse CRPS cohorts 1 and 2.
RachelRodgers/201129-Human-CRPS-Combined
Analysis of (5) combined human CRPS cohorts, inluding CRPS, HHC, and Biobank controls.
RachelRodgers/andrews-correlations
RachelRodgers/aPCoA
RachelRodgers/demux-htcf-snake
Snakemake for demultiplexing 16S sequencing files using QIIME1 on the cluster.
RachelRodgers/dirty-bbtools-viral-pipeline
The old, dirty bbtools pipeline up through assembly with IDBA_UD.
RachelRodgers/Friess_16S_Color_Picker
Color picker for 16S family-level community composition plot.
RachelRodgers/FundulidaePhylogenomics_RNAseq
Scripts and files associated with "Phylogenomic analysis of Fundulidae (Teleostei: Cyprinodontiformes) using RNA-sequencing Data"
RachelRodgers/hecatomb-eukVir-wrangling-r
Code for wrangling of eukaryotic viral data output from Hecatomb.
RachelRodgers/VirusVariantViewR-RShiny-Application
VirusVariantViewR RShiny application for viewing output from VirusVariantViewR-HTCF-Snake workflow.
RachelRodgers/JunctionSeqAnalysis
RachelRodgers/KKing-TINMAN-Collaboration
Analysis of 16S and Metagenomic WGS data for TINMAN collaboration.
RachelRodgers/Phage-Pipeline-HTCF-Snake
Phage pipeline for HTCF.
RachelRodgers/pullseq
Utility program for extracting sequences from a fasta/fastq file
RachelRodgers/RachelRodgers
Config files for my GitHub profile.
RachelRodgers/Rumspringa-Coverge-Supplementary
Code for generation of supplementary variant information tables.
RachelRodgers/shared_R_scripts
Functions and variables for 16S microbiome analyses.
RachelRodgers/snakemake_helpers
Helper functions for Snakemake workflows
RachelRodgers/starter-web
Simple starting point website project based upon Initializr
RachelRodgers/STL5-phylogenetics
Phylogenetic tree construction of STL5 for HI Nat Micro Viral Complementation.
RachelRodgers/VirusVariantViewR
Snakemake workflow for detecting CR6 or CW3 viral variants.
RachelRodgers/VirusVariantViewR-Genomes
Code and data needed to generate reference genome information for the VirusVariantViewR workflow and R Shiny application.