Raj Lab @ UCSF
The Brain Networks Laboratory at UCSF is led by Dr. Ashish Raj, and focuses on applying network theory and computational tools to problems in neuroimaging.
San Francisco
Pinned Repositories
Aggregation-Network-Diffusion
Code for implementing the Aggregation-Network diffusion model (AND), as described in the paper: "Combined Model of Aggregation And Network Diffusion Recapitulates Alzheimer’s Regional Tau-PET " by Ashish Raj*, Veronica Tora, Xiao Gao, Hanna Cho, Jae Yong Choi, Young Hoon Ryu, Chul Hyoung Lyoo, Bruno Franchi. *Department of Radiology and Biomedical Imaging, University of California at San Francisco
Brainframe_old
Matlab functionality for creating 3D human & mouse brain renderings, with many options.
cortography
Utilities for brain atlas related tasks
Human_Brain_Atlases-glasser
IntDegSeg
A repository for the article Integrative, Segregative, and Degenerate Harmonics of the Structural Connectome
journalclub
Journal Club
Parkinsonian_Symptomatology_Uncovered
Code for the paper titled "Dynamical role of pivotal brain regions in Parkinson symptomatology uncovered with deep learning." by Alex A. Nguyen, Pedro D. Maia, Xiao Gao, Pablo F. Damasceno,and Ashish Raj
RajLab-Bibliography
Bibliography files for RajLab papers
spectrome
Spectral graph model base code and examples
tau-PET-prediction
Raj Lab @ UCSF's Repositories
Raj-Lab-UCSF/spectrome
Spectral graph model base code and examples
Raj-Lab-UCSF/IntDegSeg
A repository for the article Integrative, Segregative, and Degenerate Harmonics of the Structural Connectome
Raj-Lab-UCSF/journalclub
Journal Club
Raj-Lab-UCSF/Brainframe
Matlab functionality for creating 3D human & mouse brain renderings, with many options.
Raj-Lab-UCSF/Brainframe_old
Matlab functionality for creating 3D human & mouse brain renderings, with many options.
Raj-Lab-UCSF/cortography
Utilities for brain atlas related tasks
Raj-Lab-UCSF/Human_Brain_Atlases-glasser
Raj-Lab-UCSF/RajLab-Bibliography
Bibliography files for RajLab papers
Raj-Lab-UCSF/tau-PET-prediction
Raj-Lab-UCSF/Nexis
Code for running the extended Network Diffusion Model (eNDM)
Raj-Lab-UCSF/CellTypeVulnerability
Mouse tauopathy cell-type regional vulnerability project
Raj-Lab-UCSF/cns2021
Raj-Lab-UCSF/spectrome-stability
Raj-Lab-UCSF/Tau_Transport
Code and data files required to generate all results for the axonal transport regulation project
Raj-Lab-UCSF/TauDirectionality
Network-based model of tau propagation with directionality in the mouse brain
Raj-Lab-UCSF/CellTypeConnectivity
Raj-Lab-UCSF/cns2022
Raj-Lab-UCSF/cns2023
Raj-Lab-UCSF/Human_Brain_Atlases
Commonly used human brain atlases as a Datalad dataset
Raj-Lab-UCSF/Human_Brain_Atlases-aal
Raj-Lab-UCSF/Human_Brain_Atlases-brainnectome
Raj-Lab-UCSF/Human_Brain_Atlases-desikan-killiany
Raj-Lab-UCSF/Joint-structure-function-modeling-in-AD
Raj-Lab-UCSF/MISS-Pipeline
Method for mapping cell types across brain using ISH atlases
Raj-Lab-UCSF/Nexis-Human
Nexis set up to fit to individual human data (gene or global)
Raj-Lab-UCSF/NexIS_SBI
Code for NexIS:SBI (Eventually to merge into main repo.)
Raj-Lab-UCSF/SBI-SGM-clean
Raj-Lab-UCSF/SC-from-FC
Raj-Lab-UCSF/spectrome-revisited
Raj-Lab-UCSF/SuStaIn
SuStaIn event based model, data preprocessing and analysis