Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Callstate
A faster version of GATK CallableLoci
clade-finder
Determines Y-Haplogroup Clade From Positive and Negative SNPs
extract23
Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
JSON-Haplogroup-Tree-Parser
A utility to parse the phylogenetic tree of haplogroups from FTDNA and yFull
RandyHarr's Repositories
RandyHarr/JSON-Haplogroup-Tree-Parser
A utility to parse the phylogenetic tree of haplogroups from FTDNA and yFull
RandyHarr/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
RandyHarr/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
RandyHarr/Callstate
A faster version of GATK CallableLoci
RandyHarr/clade-finder
Determines Y-Haplogroup Clade From Positive and Negative SNPs
RandyHarr/extract23
Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
RandyHarr/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
RandyHarr/GenomePrep
To preprocess, quality control and prepare consumer DTC genomes for research
RandyHarr/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
RandyHarr/htslib
C library for high-throughput sequencing data formats
RandyHarr/jekyll-theme-basically-basic
Your new Jekyll default theme
RandyHarr/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
RandyHarr/pyliftover
Pure-python implementation of UCSC liftOver genome coordinate conversion
RandyHarr/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
RandyHarr/snps
tools for reading, writing, merging, and remapping SNPs
RandyHarr/Yleaf
Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data