split_contigs.py produces empty files
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HI,
I am trying to run phamb in parallel-annotation mode, and when I used split_contigs.py as the code below
python split_contigs.py -c contigs.fna.gz
the results ´assembly´ folder and ´sample_table.txt´ file are empty.
What should I do?
thanks !
Hi Chao
It sounds like your contigs are not named in a way that works with the script.
Contigs named i.e. like this would work with the default split (-s "C") parameter of the script
Sample1Contig1
Sample1Contig2
Show me an example of your contig headers, then it's easier to figure out.
Hi Chao
It sounds like your contigs are not named in a way that works with the script. Contigs named i.e. like this would work with the default split (-s "C") parameter of the script
Sample1Contig1
Sample1Contig2
Show me an example of your contig headers, then it's easier to figure out.
thanks a lot, i have solved this question~