Ravindra-Raut
Bioinformatics: Linux; Bash; Nextflow/Docker, R/Perl/Python •Omics: transposon, RNA-seq, WGS
Bangalore
Pinned Repositories
course_oor
Open Online Introduction to R Course
cv
My CV built using RMarkdown and the pagedown package.
ExplorATEproject
R package to explore active transposable elements with RNA-seq data
GROMACS-Protein-Ligand
introduction-to-bash-scripting
Free Introduction to Bash Scripting eBook
nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
personal-website
Personal Website
ravindra-raut
my personal website
rm2gff3
Convert RepeatMasker ".out" file into a gff3 with colors!!!
TEs_genes_relationship_pipeline
Distribution of TEs and their relationship to genes in host genome
Ravindra-Raut's Repositories
Ravindra-Raut/cv
My CV built using RMarkdown and the pagedown package.
Ravindra-Raut/ExplorATEproject
R package to explore active transposable elements with RNA-seq data
Ravindra-Raut/GROMACS-Protein-Ligand
Ravindra-Raut/personal-website
Personal Website
Ravindra-Raut/TEs_genes_relationship_pipeline
Distribution of TEs and their relationship to genes in host genome
Ravindra-Raut/compgen2021
Ravindra-Raut/cs-video-courses
List of Computer Science courses with video lectures.
Ravindra-Raut/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
Ravindra-Raut/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Ravindra-Raut/ggcoverage
Visualize and annotate genomic coverage with ggplot2
Ravindra-Raut/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
Ravindra-Raut/ggtreeExtra
:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
Ravindra-Raut/github-slideshow
A robot powered training repository :robot:
Ravindra-Raut/iqtree_full
input for iqtree intact LTR
Ravindra-Raut/Kishore901
Github profile
Ravindra-Raut/mapfile-and-treefiles
Ravindra-Raut/MCHelper
MCHelper: An automatic tool to curate transposable element libraries
Ravindra-Raut/MDNotebooks
Jupyter Notebooks for Molecular Dynamics
Ravindra-Raut/netlify-statuskit
Ravindra-Raut/netlify-statuskit_1
Ravindra-Raut/Python-for-Biologist
some simple python codes for biology
Ravindra-Raut/Random_Scripts
Scripts I made for random tasks
Ravindra-Raut/recount-brain-bog19
Poster for EMBO2021-The Mobile Genome
Ravindra-Raut/repeatR
read and analyse RepeatMasker output
Ravindra-Raut/resume
Ravindra-Raut/resume-1
my resume built in R with pagedown::html_resume
Ravindra-Raut/seurat
R toolkit for single cell genomics
Ravindra-Raut/TE_ManAnnot
Accompanying repository for our publications on manual curation methods for Transposable Elements.
Ravindra-Raut/training-collection
Collection of bioinformatics training materials
Ravindra-Raut/treeio
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output