RemyLau
Post-doc fellow in the Ray and Stephanie Lane Computational Biology Department at CMU
Carnegie Mellon University
Pinned Repositories
GPSE
Graph Positional and Structural Encoder
GTaxoGym
Taxonomy of Benchmarks in Graph Representation Learning
obnb
A Python toolkit for setting up benchmarking dataset using biomedical networks
PecanPy
A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec
PyGenePlexus
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
dance
DANCE: a deep learning library and benchmark platform for single-cell analysis
good_coding_practices
visualizations
RemyLau's Repositories
RemyLau/good_coding_practices
RemyLau/py2zenodo
A Python wrapper for Zenodo REST API
RemyLau/remylau
RemyLau/awesome_ytcnl
A curated list of Remy's favorite YouTube channels
RemyLau/bionic_with_eval
All in one repo for both the BIONIC model and the evaluations with minimal installation overhead.
RemyLau/bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
RemyLau/cellxgene-census
CZ CELLxGENE Discover Census
RemyLau/CurML
RemyLau/DSTG
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
RemyLau/embiggen
🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
RemyLau/ensmallen
🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
RemyLau/gfm_technical_report
RemyLau/gli
🗂 Graph Learning Indexer: a contributor-friendly and metadata-rich platform for graph learning benchmarks. Dataloading, Benchmarking, Tagging, and more!
RemyLau/GraphGPS
Recipe for a General, Powerful, Scalable Graph Transformer
RemyLau/HoloNet
HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
RemyLau/hydra
Hydra is a framework for elegantly configuring complex applications
RemyLau/LaPreprint
📝 A nicely formatted LaTeX preprint template
RemyLau/PecanPy
A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec
RemyLau/proteinshake
Protein structure datasets for machine learning.
RemyLau/pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
RemyLau/pylogconfig
Easily configure Python logger with configuration files.
RemyLau/pytorch_geometric
Graph Neural Network Library for PyTorch
RemyLau/remylau.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
RemyLau/scGAD
RemyLau/scTAG
"ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
RemyLau/so-vits-svc
SoftVC VITS Singing Voice Conversion
RemyLau/sota_cell_type_annotation
A collection of state-of-the-art machine-learning methods for cell type annotation with utilities to run/reproduce them.
RemyLau/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
RemyLau/submitit
Python 3.6+ toolbox for submitting jobs to Slurm
RemyLau/tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.