/Giggle

Reproducibility of visualization of GIGGLE scores from the relationships between 15 genomic states across different cell types and tissues predicted by ChromHMM for Roadmap and MyoD ChIP-seq peaks

Primary LanguageJupyter Notebook

Giggle

Reproducibility of visualization of GIGGLE scores from the relationships between 15 genomic states across different cell types and tissues predicted by ChromHMM for Roadmap and MyoD ChIP-seq peaks.

It is a home task (python course)

Articles used:

GIGGLE: a search engine for large-scale integrated genome analysis (https://www.nature.com/articles/nmeth.4556)