RF02360 mismatching seed regions
kalvari opened this issue · 1 comments
kalvari commented
The regions in the SEED alignment (start-end positions) do not match the ones in the seed_region table. Due to this the sequences cannot be extracted from the seed_alignment.
We need to:
- Resolve the inconsistency
- Generate seed region md5s for this family
- Update the fasta file on the ftp
kalvari commented
Based on SVN logs, the start and end positions in seed_region table are those from the first commit, although the SEED alignment on the SVN is the updated version, re-thresholded for Rfam 12.0 (ruthe & swd commits). We need to try and commit the family once again and make sure that the regions are the correct ones.