Rfam/rfam-family-pipeline

RF02360 mismatching seed regions

kalvari opened this issue · 1 comments

The regions in the SEED alignment (start-end positions) do not match the ones in the seed_region table. Due to this the sequences cannot be extracted from the seed_alignment.

We need to:

  • Resolve the inconsistency
  • Generate seed region md5s for this family
  • Update the fasta file on the ftp

Based on SVN logs, the start and end positions in seed_region table are those from the first commit, although the SEED alignment on the SVN is the updated version, re-thresholded for Rfam 12.0 (ruthe & swd commits). We need to try and commit the family once again and make sure that the regions are the correct ones.