Rhoana

Pinned Repositories

biologicalgraphs
Biologically-Constrained Graphs for Global Connectomics Reconstruction
Language:Python10 7 02
dojo
Distributed Proofreading of Automatic Segmentations
Language:Python15 9 38
membrane_cnn
Convolutional Neural Network (CNN) for membrane classification in electron microscopy EM images, based on Theano LeNet5 convolutional neural network.
Language:Python9 8 09
Mojo
Connectome Annotation Tool
Language:C++5 4 75
perception
Evaluating 'Graphical Perception' with CNNs
Language:OpenEdge ABL17 3 011
pymaxflow
Cython wrapper for MAXFLOW library from Boykov and Kolmogorov
Language:C++13 3 113
pyrtree
An R-Tree implementation
Language:Python37 7 419
rhoana
Rhoana - Dense Automated Neuron Annotation pipeline
Language:C28 21 014
subgraph_enumeration
Motif discovery for connectomics
Language:Python52
synapseaware
Synapse-aware skeleton generation for neural circuits
Language:C++92

Rhoana's Repositories

Rhoana/pyrtree
An R-Tree implementation
Language:Python37 7 419
Rhoana/rhoana
Rhoana - Dense Automated Neuron Annotation pipeline
Language:C28 21 014
Rhoana/perception
Evaluating 'Graphical Perception' with CNNs
Language:OpenEdge ABL17 3 011
Rhoana/dojo
Distributed Proofreading of Automatic Segmentations
Language:Python15 9 38
Rhoana/biologicalgraphs
Biologically-Constrained Graphs for Global Connectomics Reconstruction
Language:Python10 7 02
Rhoana/synapseaware
Synapse-aware skeleton generation for neural circuits
Language:C++92
Rhoana/subgraph_enumeration
Motif discovery for connectomics
Language:Python52
Rhoana/blockbased_synapseaware
Block-Based Synapse Aware Skeleton Generation
Language:Python31
Rhoana/icon
Language:Python31
Rhoana/rhoana2
Rhoana pipeline version 2
Language:C++31
Rhoana/tinyr
An r-tree implementation in cython
Language:Python3 6 04
Rhoana/butterfly
Documentation
Language:JavaScript25
Rhoana/3dxp
3D Experiments for Connectomics
Language:Python13
Rhoana/icon_archived
Language:Jupyter Notebook12
Rhoana/rh_renderer
Rendering library
Language:Python15
Rhoana/small_stack_affine_alignment
A fast affine only registration for a small stack
Language:Python1 6 01
Rhoana/rhoana-website
Language:CSS00
Rhoana/bflyVM
All Butterfly Middleware in one VM
Language:Shell1
Rhoana/butterfly2
Language:Python
Rhoana/cloud-volume
A client for reading and writing Neuroglancer Precomputed volumes on cloud services.
Language:Python
Rhoana/CudaSift
A CUDA implementation of SIFT for NVidia GPUs
Language:Cuda3
Rhoana/FijiBento
Tools for aligning very large ssEM image stacks on a compute cluster.
Language:Java6
Rhoana/mb
Language:JavaScript1
Rhoana/MojoToolkit
tools
Language:Python1
Rhoana/neuroglancer
WebGL-based viewer for volumetric data
Language:TypeScript
Rhoana/rh_config
Centralized, simple parameter config
Language:Python3
Rhoana/rh_logger
Logging / process status / metrics reporting
Language:Python4
Rhoana/Rhoana.github.io
Language:HTML1
Rhoana/soma_segmentation
Code for segmenting somata in label volumes.
Language:Python
Rhoana/topological_thinning
Generate skeletons for neurological processes
Language:C++1