/ProtienSequencer

Converting Codon Sequences to Corresponding Acid Sequences.

Primary LanguagePython

Gitpod Ready-to-Code

ProtienSequencer

Software Engineering Project

  1. Set the configurations for the mongo db in the database.py file.
  2. The project is Separated into modules ie, rituparna, database and main.
  • The functions can be found in rituparna.py, the configurations for the database can be found in the database.py file.

TODO

  1. The plotting of the histogram and the skew is yet to be done.

Completed

  1. Found out corresponding Acid.

  2. Stored to Database

Known bugs

  1. None So Far.

Resources

  1. Plotting into Histogram - 1
  2. Plotting into Histogram - 2
  3. Installing a Virtual Environment
  4. Getting statrted with mongo and Docker

INSTALLING IN YOUR SYSTEM

  1. Create a virtual environment
  2. use pip install -r requirements.txt
  3. Start mongo db server on 0.0.0.0:27017/
  4. If you are using Docker, to run the database, use docker run --name storetest -p 27017-27019:27017-27019 mongo

Notes:

  1. The requirements.txt had to be removed due to various dependency bugs popping out in the repository.