RicardoMBorges
Professor at Natural Products Research Institute at UFRJ (Rio de Janeiro, Brazil)
Federal University of Rio de JaneiroFederal University of Rio de Janeiro, Brazil
Pinned Repositories
A-Novel-Algorithm-for-Targeted-Metabolite-Profiling-using-NMR-Spectrum
Source code of synthetic spectrum program in MATLAB
BATCH_aligner
to ensure that features detected across multiple batches of mass spectrometry (MS) data are accurately aligned
Batch_stratification
Dados_ColetaCAPES
DAFdiscovery
DAFdiscovery is meant to disseminate STOCSY calculation for NP scientists to enable data fusion and discovery of compounds of interest from correlation calculations. The use of .csv files is meant to enable users to use their methods of choice for (MS and/or NMR) data processing.
DBsimilarity
A method proposed to help natural product researchers analyze chemical data obtained from databases.
DBsimilarity_Colab
DoE_pipeline
This is a homemade pipeline for Design of Experiments. It is far from complete but it does go up to Response Surface plot
Gradient_verification_for_HPLC
We will explore the process of calculating and visualizing the usage of solvents in a preparative High-Performance Liquid Chromatography (HPLC) system. Our focus will be on the dynamic changes in solvent B's percentage over the course of the HPLC run, understanding the gradient profile, and calculating the total volumes of solvents A and B used.
MFQL-for-Dereplication-of-Natural-Products-Using-LipidPlorer
MFQL files for Natural Products Dereplication
RicardoMBorges's Repositories
RicardoMBorges/BATCH_aligner
to ensure that features detected across multiple batches of mass spectrometry (MS) data are accurately aligned
RicardoMBorges/DAFdiscovery
DAFdiscovery is meant to disseminate STOCSY calculation for NP scientists to enable data fusion and discovery of compounds of interest from correlation calculations. The use of .csv files is meant to enable users to use their methods of choice for (MS and/or NMR) data processing.
RicardoMBorges/DBsimilarity
A method proposed to help natural product researchers analyze chemical data obtained from databases.
RicardoMBorges/DoE_pipeline
This is a homemade pipeline for Design of Experiments. It is far from complete but it does go up to Response Surface plot
RicardoMBorges/Gradient_verification_for_HPLC
We will explore the process of calculating and visualizing the usage of solvents in a preparative High-Performance Liquid Chromatography (HPLC) system. Our focus will be on the dynamic changes in solvent B's percentage over the course of the HPLC run, understanding the gradient profile, and calculating the total volumes of solvents A and B used.
RicardoMBorges/MFQL-for-Dereplication-of-Natural-Products-Using-LipidPlorer
MFQL files for Natural Products Dereplication
RicardoMBorges/A-Novel-Algorithm-for-Targeted-Metabolite-Profiling-using-NMR-Spectrum
Source code of synthetic spectrum program in MATLAB
RicardoMBorges/Batch_stratification
RicardoMBorges/Dados_ColetaCAPES
RicardoMBorges/DBsimilarity_Colab
RicardoMBorges/DBsimilarity_v2
...
RicardoMBorges/GNPSDocumentation
Documentation for GNPS and related tools as written in mkdocs
RicardoMBorges/HPLCdata_Shimadzu
HPLCdata_Shimadzu
RicardoMBorges/MatLab_NMRdatacomparison
MatLab scripts for overlaying and marking matched signals for HSQC NMR compound identification. Entries are based on experimental NMR data (1H and 13C) organized following a template as .txt file.
RicardoMBorges/MatlabScripts
Some scripts for Matlab
RicardoMBorges/nmrfilter
RicardoMBorges/nmrfilterprojects
RicardoMBorges/Personal-Projects
Personal Stuff
RicardoMBorges/SolanumDATABASE
A Database for Solanum (Solanaceae) chemicals open for contribuitions
RicardoMBorges/Plots_from_MetaboAnalyst
This is for getting high resolution plots from MataboAnalyst data
RicardoMBorges/PyMetaboFlow
Python codes for "vector" (from NMR, LC-UV, etc.) data to perform metabolomics comprising: data import; section exclusion; peak alignment; normalization; scaling; PCA; PLS-DA; etc.
RicardoMBorges/useful_stuff
useful_stuff