RichieHakim
Currently a PhD candidate in Bernardo Sabatini's lab at Harvard interested in brain-machine-interaces and computation in the brain.
Sabatini Lab, Harvard Medical SchoolBoston
Pinned Repositories
basic_neural_processing_modules
A bag of functions for data science
Big_Ugly_ROI_Tracker
BURT: A pipeline for tracking ROIs over sessions for calcium imaging
BMI_for_ScanImage
Some simple code to run optical Brain Machine Interfacing experiments through ScanImage & Matlab.
BWAIN
Brain-machine-interfacing suite for 2-photon calcium imaging
face-rhythm
A pipeline for extracting and interpreting facial movements from video
ROICaT
Region Of Interest Classification and Tracking
rolling-variance
Simple code for efficient calculation of online updates to moving or running variance and mean using Welford's method.
s2p_on_o2
a system for running suite2p on o2
sparse_convolution
Sparse convolution in python
vqt
Variable Q-Transform
RichieHakim's Repositories
RichieHakim/ROICaT
Region Of Interest Classification and Tracking
RichieHakim/face-rhythm
A pipeline for extracting and interpreting facial movements from video
RichieHakim/basic_neural_processing_modules
A bag of functions for data science
RichieHakim/rolling-variance
Simple code for efficient calculation of online updates to moving or running variance and mean using Welford's method.
RichieHakim/BWAIN
Brain-machine-interfacing suite for 2-photon calcium imaging
RichieHakim/s2p_on_o2
a system for running suite2p on o2
RichieHakim/Big_Ugly_ROI_Tracker
BURT: A pipeline for tracking ROIs over sessions for calcium imaging
RichieHakim/BMI_for_ScanImage
Some simple code to run optical Brain Machine Interfacing experiments through ScanImage & Matlab.
RichieHakim/sparse_convolution
Sparse convolution in python
RichieHakim/vqt
Variable Q-Transform
RichieHakim/BMI_IDAP
Brain-machine-interface InterDay Analysis Pipeline
RichieHakim/course-content
Summer course content for Neuromatch Academy
RichieHakim/GCaMP_ROI_classifier
simple CNN for classifying ROIs from 2p calcium imaging
RichieHakim/harvard_cluster_helpers
Some helper scripts and notebooks for transferring files and requesting jobs on O2 and FASRC at Harvard
RichieHakim/NBAP
Neural-Behavior Analysis Pipeline
RichieHakim/NMA-project
ludicrous lobsters group alpha
RichieHakim/roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
RichieHakim/rolling_percentile
Fast rolling percentile function for python
RichieHakim/secret_key_database
Store and encrypt keys. Simple Python library.
RichieHakim/simclr
SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners
RichieHakim/technical_interview_public
RichieHakim/tensor_regression
Pytorch functions for performing tensor regression
RichieHakim/torch_linear_regression
Fast linear regression using PyTorch: Ordinary Least Squares (OLS), Ridge, Reduced-Rank-Regression (RRR)
RichieHakim/torchinterp1d
1D interpolation for pytorch