Pinned Repositories
Analytics_Vidhya
Codes related to activities on AV including articles, hackathons and discussions.
BrainInABlender
An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA; 2Genet., Univ. of Michigan, Ann Arbor, MI, USA; 3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA
COMPOSED
Code for COMPOSED method of merging brain regions for classification or regression tasks
Examples
Various examples for different articles
gwas-pw
Pariwise analysis of GWAS
Random_mandala_plot
Generate a random pretty mandala plot in R
RMarkdown_May11_2016
Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Training Program.
TargetPred
In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
useR-machine-learning-tutorial
useR! 2016 Tutorial: Machine Learning Algorithmic Deep Dive http://user2016.org/tutorials/10.html
Riedelbc's Repositories
Riedelbc/Analytics_Vidhya
Codes related to activities on AV including articles, hackathons and discussions.
Riedelbc/BrainInABlender
An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA; 2Genet., Univ. of Michigan, Ann Arbor, MI, USA; 3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA
Riedelbc/COMPOSED
Code for COMPOSED method of merging brain regions for classification or regression tasks
Riedelbc/Examples
Various examples for different articles
Riedelbc/gwas-pw
Pariwise analysis of GWAS
Riedelbc/Random_mandala_plot
Generate a random pretty mandala plot in R
Riedelbc/RMarkdown_May11_2016
Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Training Program.
Riedelbc/TargetPred
In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
Riedelbc/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
Riedelbc/useR-machine-learning-tutorial
useR! 2016 Tutorial: Machine Learning Algorithmic Deep Dive http://user2016.org/tutorials/10.html
Riedelbc/VCF2BED