RimanB
Research Fellow in Medicine || Dana-Farber Cancer Institute || Harvard Medical School
Dana-Farber Cancer Institute - Harvard Medical SchoolBoston, MA, US
Pinned Repositories
2021-March-Single-Cell-RNA-Seq-Analysis
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
2022_QuPath_Scripts
Assorted collection of QuPath scripts, likely between 2022 and 2023
abdiv
Alpha and beta diversity measures for community ecology
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
BART
BART risk predictor (experimental)
Bioinformatics-for-RNA-Seq
A Tufts University Research Technology Workshop
BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
CytoCommunity
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
DS_scRNA_20240228
Department of Data Science intro to scRNAseq and data preprocessing workshop
DS_seurat_20240313
RimanB's Repositories
RimanB/DS_scRNA_20240228
Department of Data Science intro to scRNAseq and data preprocessing workshop
RimanB/DS_seurat_20240313
RimanB/iCCA_Diversity
RimanB/NGS-variants-training
GitHub for the SIB courses NGS - Genome variant analysis
RimanB/sanbomics_scripts
scripts and notebooks from sanbomics
RimanB/2024_ISB_workshop_Practical_Methods_in_Spatial-Omics
RimanB/clusterProfiler_protocol
omics data analysis using clusterProfiler ;)
RimanB/coding_exercise_TCGA_infiltration
coding exercise using TCGA immune infiltration data
RimanB/data_to_viz
Leading to the dataviz you need
RimanB/DGE_workshop_salmon_online
RimanB/dsbook-part-2
Repository for Advanced Data Science Book
RimanB/ELD
RimanB/FigureOneLab
A running start for your computational biology portfolio.
RimanB/gfoRmula
The gfoRmula package implements the parametric g-formula in R. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mean of an outcome under hypothetical treatment strategies specified by the user.
RimanB/hiepnguyen.github.io
RimanB/InSituType
An R package for performing cell typing in SMI and other single cell data
RimanB/install-octopus-cli-action
| Public | :octocat: GitHub Action to Install the Octopus CLI
RimanB/Intro-to-ChIPseq-flipped
RimanB/liana-py
LIANA+: an all-in-one framework for cell-cell communication
RimanB/MedSAM
Segment Anything in Medical Images
RimanB/MGMA_2024
RimanB/ML-YouTube-Courses
📺 Discover the latest machine learning / AI courses on YouTube.
RimanB/pathml
Tools for computational pathology
RimanB/R_mastery
My journey to master R
RimanB/STAMP
Solid Tumor Associative Modeling in Pathology
RimanB/StatsForCompBio
DFCI Department of Data Sciences workshop on Statistics for Computational Biology Projects
RimanB/Tail-Loss-Primates
RimanB/tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.
RimanB/user-training
HMS Research Computing User Training
RimanB/winter23