Riselya
I'm a research fellow at Salford University, Manchester, studying host-microbe interactions in wildlife.
Pinned Repositories
CodeClub
Diet-effects-on-the-amphibian-skin-microbiome
Infection-and-Migration-metaanalysis
Data and analysis for our article "How does infection alter animal migration? A meta-analysis across experiemntal and observational studies" J. ANIMAL ECOLOGY 2017
Link-between-networks-and-occupancy-in-microbiomes
Data and code for our manuscript "Ecological insights from gut microbiome networks: linking taxa distributions to co-occurrence networks across vertebrates"
Meerkat-microbiome-climate-change
Data, code and Rmarkdown report for "Climate change drives loss of bacterial gut mutualists at the expense of host survival in wild meerkats"
Microbiome-analysis-examples
I'm trying to organize my code for various microbiome analyses, so I can pass it on to my students. I include some example data and the R code to generate nice plots for various types of analyses. I hope to build this up over time.
Microbiome-repeatability
Migratory-shorebird-microbiota
Data and analysis to go with our article "Gut microbiota of a long-distance migrant demonstrates resistance against environmental microbe incursions" MOLECULAR ECOLOGY 2017
Mockingbird-Microbiome-Phylosymbiosis-Project
Data and code for our paper "Mechanisms governing avian phylosymbiosis". ECOLOGY AND EVOLUTION 2020
Prevalence-Thresholds-Metaanalysis
Data and code for manuscript 'Phylogeny- and abundance- based metrics allow for the consistent comparison of core gut microbiome diversity indices across host species'. FRONTIERS IN MICROBIOLOGY 2021
Riselya's Repositories
Riselya/Infection-and-Migration-metaanalysis
Data and analysis for our article "How does infection alter animal migration? A meta-analysis across experiemntal and observational studies" J. ANIMAL ECOLOGY 2017
Riselya/Microbiome-analysis-examples
I'm trying to organize my code for various microbiome analyses, so I can pass it on to my students. I include some example data and the R code to generate nice plots for various types of analyses. I hope to build this up over time.
Riselya/Migratory-shorebird-microbiota
Data and analysis to go with our article "Gut microbiota of a long-distance migrant demonstrates resistance against environmental microbe incursions" MOLECULAR ECOLOGY 2017
Riselya/Mockingbird-Microbiome-Phylosymbiosis-Project
Data and code for our paper "Mechanisms governing avian phylosymbiosis". ECOLOGY AND EVOLUTION 2020
Riselya/Prevalence-Thresholds-Metaanalysis
Data and code for manuscript 'Phylogeny- and abundance- based metrics allow for the consistent comparison of core gut microbiome diversity indices across host species'. FRONTIERS IN MICROBIOLOGY 2021
Riselya/CodeClub
Riselya/Diet-effects-on-the-amphibian-skin-microbiome
Riselya/Link-between-networks-and-occupancy-in-microbiomes
Data and code for our manuscript "Ecological insights from gut microbiome networks: linking taxa distributions to co-occurrence networks across vertebrates"
Riselya/Meerkat-microbiome-climate-change
Data, code and Rmarkdown report for "Climate change drives loss of bacterial gut mutualists at the expense of host survival in wild meerkats"
Riselya/Microbiome-repeatability
Riselya/Migration-shorebird-physiology
Data and code to go with the manuscript "Active migration is associated with specific and consistent changes to gut microbiota in shorebirds" J. ANIMAL ECOLOGY 2017
Riselya/Plasmid-networks
Riselya/Plasmid-Project
Data and code to go with our manuscript "A wastewater plasmid-host network is dominated by specialist plasmids".
Riselya/TB-characterization-Meerkats
Manuscript submitted to J. Wildlife Diseases: Characterizing tuberculosis progression in wild meerkats (Suricata suricatta) from faecal samples and symptom data.
Riselya/Whinchat-wintering-ecology
Data and code to go with the publication "Patterns in departure phenology and mass gain on African non‐breeding territories prior to the Sahara crossing in a long‐distance migrant" IBIS 2015