RishiDeKayne
PostDoc at the Uni of Edinburgh - working on adaptation and speciation genomics in Danaus butterflies and whitefish - scripts are typically packaged by paper.
Pinned Repositories
Alpine_whitefish_WGS
All scripts associated with the whole-genome sequencing and analysis of 99 whitefish individuals (De-Kayne et al. 2022)
BashIntro
Betancur_Lab_Notes
Danaus_Dchry2.2_annotation
This repository contains all commands run for the annotation and analysis of the Danaus chrysippus2.2 assembly (Singh & De-Kayne et al. 2022)
Danaus_supergene_structure
Scripts for genome annotation and analysis (Kim & De-Kayne et al. 2022)
GetTEBed
GetTEBed will calculate the TE content in windows along the genome using a genome and the .out file from a RepeatMasker run
LG_to_Chromosome_SyntenyPlots
This repository contains a custom R script to plot Circos plots using Circlize to identify synteny between linkage groups and chromosomes in a reference genome
RishiDeKayne
WhitefishLinkageMap
Scripts for linkage mapping of C. sp. "Albock" (De-Kayne & Feulner 2018)
WhitefishReferenceGenome
Scripts used for whitefish genome assembly/analysis (De-Kayne, Zoller & Feulner 2020)
RishiDeKayne's Repositories
RishiDeKayne/LG_to_Chromosome_SyntenyPlots
This repository contains a custom R script to plot Circos plots using Circlize to identify synteny between linkage groups and chromosomes in a reference genome
RishiDeKayne/WhitefishReferenceGenome
Scripts used for whitefish genome assembly/analysis (De-Kayne, Zoller & Feulner 2020)
RishiDeKayne/WhitefishLinkageMap
Scripts for linkage mapping of C. sp. "Albock" (De-Kayne & Feulner 2018)
RishiDeKayne/Alpine_whitefish_WGS
All scripts associated with the whole-genome sequencing and analysis of 99 whitefish individuals (De-Kayne et al. 2022)
RishiDeKayne/BashIntro
RishiDeKayne/Danaus_Dchry2.2_annotation
This repository contains all commands run for the annotation and analysis of the Danaus chrysippus2.2 assembly (Singh & De-Kayne et al. 2022)
RishiDeKayne/Betancur_Lab_Notes
RishiDeKayne/Danaus_supergene_structure
Scripts for genome annotation and analysis (Kim & De-Kayne et al. 2022)
RishiDeKayne/GetTEBed
GetTEBed will calculate the TE content in windows along the genome using a genome and the .out file from a RepeatMasker run
RishiDeKayne/RishiDeKayne
RishiDeKayne/RishiDeKayne.github.io
my personal website
RishiDeKayne/Run_PSMC