Ritchie Lab

Biomedical and Translational Informatics Laboratory

University of Pennsylvania

Pinned Repositories

athena
Language:C++2 3 00
biobin
Language:C++2 4 00
COVID-19-patient-survey
Patient reported surveys to deploy in observational studies during COVID-19 pandemic
1 5 00
dnanexus
Language:C++1 4 16
eQTpLot
Visualization of Colocalization Between eQTL and GWAS Data
Language:R69 7 1518
Gene-level-statistical-colocalization
Language:R14 5 22
GWAS-QC
Quality control steps for GWAS
Language:Shell8 4 16
hudson
An R package for creating mirrored Manhattan plots
Language:R3 2 03
multi_tissue_twas_sim
This repository provides scripts to simulate SNP-expression-trait relationships across multiple tissues.
Language:R1 2 00
pMDR
Parallel MDR (Multifactor dimensionality reduction)
Language:C++20

Ritchie Lab's Repositories

RitchieLab/eQTpLot
Visualization of Colocalization Between eQTL and GWAS Data
Language:R69 7 1518
RitchieLab/Gene-level-statistical-colocalization
Language:R14 5 22
RitchieLab/GWAS-QC
Quality control steps for GWAS
Language:Shell8 4 16
RitchieLab/hudson
An R package for creating mirrored Manhattan plots
Language:R3 2 03
RitchieLab/athena
Language:C++2 3 00
RitchieLab/biobin
Language:C++2 4 00
RitchieLab/pMDR
Parallel MDR (Multifactor dimensionality reduction)
Language:C++20
RitchieLab/COVID-19-patient-survey
Patient reported surveys to deploy in observational studies during COVID-19 pandemic
1 5 00
RitchieLab/dnanexus
Language:C++1 4 16
RitchieLab/genomeSIMLA
Language:C++1 3 10
RitchieLab/LPC
Documentation and informational resources for LPC use
11
RitchieLab/multi_tissue_twas_sim
This repository provides scripts to simulate SNP-expression-trait relationships across multiple tissues.
Language:R1 2 00
RitchieLab/LOKI
Language:Python0 4 01
RitchieLab/PLATO
PLatform for the Analysis, Translation, and Organization of large-scale data
Language:C++0 2 20
RitchieLab/visualization
Language:Ruby0 4 00
RitchieLab/biofilter
Language:Python4 01
RitchieLab/biofilter-manual
Language:Ruby
RitchieLab/biofilter-paper
Language:HTML
RitchieLab/eMERGE-PGX
Language:Shell3 0
RitchieLab/GWAS-QC-Internal
Quality control steps for GWAS -- Internal Use
RitchieLab/imputation
Language:Python3 0
RitchieLab/ldspline
Language:C++4 0
RitchieLab/LocoColoc
Consolidation of ColocQuiaL, eQTLPlot and Sudha's Gene Based Coloc tools
Language:R4 01
RitchieLab/metabochip-phewas
Language:Python3 0
RitchieLab/paris
Language:C++4 0
RitchieLab/PrediXcan_TWAS_nextflow
Language:Dockerfile
RitchieLab/rjungle
Language:Python3 0
RitchieLab/SKAT
Language:R3 0
RitchieLab/tutorials
3 0
RitchieLab/utility
Language:Python8 1