Pinned Repositories
apds
APDS is a tool that finds out approximate occurences of a degenerate pattern in a given input sequence. It is based on the algorithm described in the paper titled Linear Algorithm for Conservative Degenerate Pattern by Maxime Crochemore, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Fatima Vayani
clustered_clumps
*ClusteredClumps* is a tool that finds out clustered-clumps of - degenerate patterns in a solid text (Problem-1 or Search Type: A) - solid patterns in a degenerate text (Problem-2 or Search Type: B) - degenerate patterns in a degenerate text (Problem-3 or Search Type: C)
degLPF
Computing Longest Previous Factor (LPF) Array in a Degenerate String
ElDeS
*ElDeS* is a tool that finds out occurrences of degenerate patterns in an elastic-degenerate text.
hello
hypo
HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
lpsf
Longest Previous/Successor Arrays
luf
A tool to compute the Longest Unbordered Factor Array in quasi-linear time.
mawcd
Codec (compressor-Decompressor) using MAWs (Minimal Absent Words)
Superbubbles
SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
Ritu-Kundu's Repositories
Ritu-Kundu/Superbubbles
SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
Ritu-Kundu/ElDeS
*ElDeS* is a tool that finds out occurrences of degenerate patterns in an elastic-degenerate text.
Ritu-Kundu/apds
APDS is a tool that finds out approximate occurences of a degenerate pattern in a given input sequence. It is based on the algorithm described in the paper titled Linear Algorithm for Conservative Degenerate Pattern by Maxime Crochemore, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Fatima Vayani
Ritu-Kundu/clustered_clumps
*ClusteredClumps* is a tool that finds out clustered-clumps of - degenerate patterns in a solid text (Problem-1 or Search Type: A) - solid patterns in a degenerate text (Problem-2 or Search Type: B) - degenerate patterns in a degenerate text (Problem-3 or Search Type: C)
Ritu-Kundu/lpsf
Longest Previous/Successor Arrays
Ritu-Kundu/suk
SUK: Solid (Unique) Kmers Computing module
Ritu-Kundu/degLPF
Computing Longest Previous Factor (LPF) Array in a Degenerate String
Ritu-Kundu/hello
Ritu-Kundu/hypo
HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
Ritu-Kundu/luf
A tool to compute the Longest Unbordered Factor Array in quasi-linear time.
Ritu-Kundu/mawcd
Codec (compressor-Decompressor) using MAWs (Minimal Absent Words)
Ritu-Kundu/slog
Simple C++ Logging library (Time and memory usage)
Ritu-Kundu/ritu-kundu.github.io
Ritu-Kundu/Website
Personal Website
Ritu-Kundu/WebSlate