Roadon

Roadon's Stars

• trojan-gfw/trojan

  An unidentifiable mechanism that helps you bypass GFW.

  Language:C++18.9k3k

• txthinking/brook

  A cross-platform programmable network tool

  Language:Go14.5k2.4k

• tatonetti-lab/h2o

  Observational Heritability

  Language:Jupyter Notebook72

• kubernetes/kubernetes

  Production-Grade Container Scheduling and Management

  Language:Go110k39.4k

• griffithlab/GenVisR

  Genome data visualizations

  Language:R20862

• hdng/clonevol

  Inferring and visualizing clonal evolution in multi-sample cancer sequencing

  Language:R14145

• chrisamiller/fishplot

  Create timecourse "fish plots" that show changes in the clonal architecture of tumors

  Language:R16446

• genome/sciclone

  An R package for inferring the subclonal architecture of tumors

  Language:R11555

• genome/bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake30095

• MariaNattestad/Ribbon

  A genome browser designed for complex structural variants and long reads.

  Language:JavaScript26229

• UMCUGenetics/MutationalPatterns

  R package for extracting and visualizing mutational patterns in base substitution catalogues

  Language:R10445

• plotly/plotly.R

  An interactive graphing library for R

  Language:R2.5k622

• genome/gms

  The Genome Modeling System installer

  Language:Perl7822

• chrisamiller/copyCat

  a parallel R package for detecting copy-number alterations from short sequencing reads

  Language:R2210

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++404154

• OpenGene/MutScan

  Detect and visualize target mutations by scanning FastQ files directly

  Language:C14938

• shadowsocks/shadowsocks-windows

  A C# port of shadowsocks

  Language:C#58.3k16.4k

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k577

• najoshi/sickle

  Windowed Adaptive Trimming for fastq files using quality

  Language:C21895

• ibest/seqyclean

  Language:C++262

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python988354

• PubuduSaneth/cnvScan

  CNV screening and annotation tool

  Language:Python245

• yuchaojiang/Canopy

  Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

  Language:R6826

• pezmaster31/bamtools

  C++ API & command-line toolkit for working with BAM data

  Language:C++415152

• genome/breakdancer

  SV detection from paired end reads mapping

  Language:C++11442

• hall-lab/speedseq

  A flexible framework for rapid genome analysis and interpretation

  Language:C313116

• BoevaLab/FREEC

  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

  Language:C++14749

• cancerit/BRASS

  Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

  Language:Perl5720

• adamewing/bamsurgeon

  tools for adding mutations to existing .bam files, used for testing mutation callers

  Language:Python23186

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java637384