Pinned Repositories
EnvironmentSetup
STAR
RNA-seq aligner
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
philosopher
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
nf-msconvert
Leverages proteowizard's msconvert in a nextflow workflow