Pinned Repositories
BRENDApyrser
A Python parser for the BRENDA database
filterSAM
Tools to filter SAM/BAM files by percent identity and percent of matched sequence
GenBankpy
Tools to download, parse and filter GenBank files
Jplaceparser
A python parser for jplace (evolutionary placement) files
MetaTag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
modeloEEI
Modelo aplicación web para la enseñanza en secundaria de las Especies Exóticas Invasoras
Netflowpy
A python tool to optimize chemical concentration trajectories in network-based chemical systems
parallelBAM
Tools to parallelize operations on large BAM files
Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
Robaina's Repositories
Robaina/BRENDApyrser
A Python parser for the BRENDA database
Robaina/Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
Robaina/oil_spill_example
Robaina/seqpicker
Robaina/_2022_ML-ddG-Blaabjerg
Robaina/Biochemical_KG
Robaina/carveme_expanded_universe
CarveMe: genome-scale metabolic model reconstruction
Robaina/CatPred
Machine Learning models for in vitro enzyme kinetic parameter prediction
Robaina/cgem-forge
Robaina/chemSearch
Robaina/DeepProZyme
Robaina/DiffDock
Robaina/Dokdonia
Source code employed in the study: Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium
Robaina/EpHod
Machine learning prediction of enzyme optimum pH
Robaina/ESM2-docker
Robaina/galapagos_cgem
Robaina/galapagos_trophic_web
Robaina/GATSol
GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling
Robaina/genome_selector
Robaina/GeoPoc
Robaina/MarineGEMs
A repository of reference genome-scale metabolic models of marine microbes
Robaina/optimalPh
Robaina/PAZy_database
Robaina/Phycogem
Modeling phycospheric metabolic interactions in python
Robaina/ProtScout
Filter protein sequences by predicted protein properties
Robaina/Robaina
Robaina/TemBERTure
Robaina/TemStaPro
TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
Robaina/UniKP
Robaina/Universal_Models