Robaina

Computational Biology | Data Science | Python Dev. | Ph.D. Systems Biology

NALAtlantic Ocean

Pinned Repositories

BRENDApyrser
A Python parser for the BRENDA database
Language:Python28 2 87
filterSAM
Tools to filter SAM/BAM files by percent identity and percent of matched sequence
Language:Python4 1 30
GenBankpy
Tools to download, parse and filter GenBank files
Language:Python5 2 21
Jplaceparser
A python parser for jplace (evolutionary placement) files
Language:Python2 2 20
MetaTag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
Language:Python1 2 700
modeloEEI
Modelo aplicación web para la enseñanza en secundaria de las Especies Exóticas Invasoras
Language:JavaScript0 2 10
Netflowpy
A python tool to optimize chemical concentration trajectories in network-based chemical systems
Language:Python3 2 00
parallelBAM
Tools to parallelize operations on large BAM files
Language:Python2 2 00
Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
Language:Python13 1 551

Robaina's Repositories

Robaina/BRENDApyrser
A Python parser for the BRENDA database
Language:Python28 2 87
Robaina/Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
Language:Python13 1 551
Robaina/oil_spill_example
Language:Jupyter Notebook1 1 0
Robaina/seqpicker
Language:Python1 1 1
Robaina/_2022_ML-ddG-Blaabjerg
Language:Python0 0
Robaina/Biochemical_KG
Language:Python1 0
Robaina/carveme_expanded_universe
CarveMe: genome-scale metabolic model reconstruction
Language:Python0 0
Robaina/CatPred
Machine Learning models for in vitro enzyme kinetic parameter prediction
Language:Python
Robaina/cgem-forge
Language:Jupyter Notebook1
Robaina/chemSearch
Language:Jupyter Notebook
Robaina/DeepProZyme
Language:Jupyter Notebook1 0
Robaina/DiffDock
Language:Python
Robaina/Dokdonia
Source code employed in the study: Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium
Language:Python1 0
Robaina/EpHod
Machine learning prediction of enzyme optimum pH
Language:Python
Robaina/ESM2-docker
Language:Python
Robaina/galapagos_cgem
Language:Jupyter Notebook1 0
Robaina/galapagos_trophic_web
Language:Jupyter Notebook1 0
Robaina/GATSol
GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling
Language:Python
Robaina/genome_selector
Language:Jupyter Notebook
Robaina/GeoPoc
Language:Python
Robaina/MarineGEMs
A repository of reference genome-scale metabolic models of marine microbes
Language:Jupyter Notebook1 0
Robaina/optimalPh
Language:Python0 0
Robaina/PAZy_database
Language:Jupyter Notebook
Robaina/Phycogem
Modeling phycospheric metabolic interactions in python
Language:Python1 14
Robaina/ProtScout
Filter protein sequences by predicted protein properties
Language:Python
Robaina/Robaina
2 0
Robaina/TemBERTure
Language:Python0 0
Robaina/TemStaPro
TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
Language:Python0 0
Robaina/UniKP
Language:Python0 0
Robaina/Universal_Models
Language:Jupyter Notebook