Pinned Repositories
count_dual_indexes
C++ program to take the FASTQ files of two indexes and count the index pairs.
drop_it_like_its_hot_r
Compilation of R heatmap functions.
fastq_scrubber
Really hacky way to remove adapters from NGS while keeping reads in order. Recommend alt strategy with cutadapt instead.
fastqSol2Phred
Simple program that converts FASTQ files in Solexa quality offset (QUAL+64) to a FASTQ file with Phred/Sanger offset (QUAL+33).
genbankFeatureFasta2Bed
Simple python script to convert the exported features for a genbank record (FASTA format) into a 5 column BED file.
motif_scraper
Tool for finding matches to degenerate sequence motifs in FASTA files.
ngg2
Python package to identify NGGNGG Cas9 gRNA sites in any indexed FASTA file.
snpduo
Repository for the snpduo command-line tool. The tool is designed to calculate identity-by-state in large SNP genotyping datasets. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.
snpduoweb
Repository for the web-based version / visualization engine for the SNPduoWeb tool. Designed to visualize identity-by-state in high-density snp data. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.
vcf2snpduo
Simple python script for converting a valid, multi-sample VCF file into a SNPduo compatible format.
Roberson Lab's Repositories
RobersonLab/drop_it_like_its_hot_r
Compilation of R heatmap functions.
RobersonLab/motif_scraper
Tool for finding matches to degenerate sequence motifs in FASTA files.
RobersonLab/vcf2snpduo
Simple python script for converting a valid, multi-sample VCF file into a SNPduo compatible format.
RobersonLab/ngg2
Python package to identify NGGNGG Cas9 gRNA sites in any indexed FASTA file.
RobersonLab/count_dual_indexes
C++ program to take the FASTQ files of two indexes and count the index pairs.
RobersonLab/fastq_scrubber
Really hacky way to remove adapters from NGS while keeping reads in order. Recommend alt strategy with cutadapt instead.
RobersonLab/genbankFeatureFasta2Bed
Simple python script to convert the exported features for a genbank record (FASTA format) into a 5 column BED file.
RobersonLab/snpduoweb
Repository for the web-based version / visualization engine for the SNPduoWeb tool. Designed to visualize identity-by-state in high-density snp data. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.
RobersonLab/2015_ngg2_manuscript
Repository for data and scripts associated with manuscript
RobersonLab/2018_motif_scraper_paper
Code used to generate the motif scraper paper
RobersonLab/2019_Nicastrin_CellLine_Knockdown
RobersonLab/2019_UntreatedJDM_RNASeq
RobersonLab/2019CasXModelOrgCatalog
RobersonLab/2021_Paley_neurosarcoid_scRNASeq
RobersonLab/2021_ssc_rnaseq
RobersonLab/2022_hs_pstpip1
RobersonLab/2024-05_Jarjour_SLE_exosomes
Code for analysis of paper about exosomal RNAs in SLE and controls
RobersonLab/compare_order
Compare the read ids between two Illumina FASTQ or SCARF files to confirm reads are in sync.
RobersonLab/count_unique_reads
Count Unique Reads
RobersonLab/end_note_styles
Styles I've used for NIH grant applications
RobersonLab/height_selection_sim
Simple Python package to simulate height in synthetic populations and response to selective against increased or decreased height.
RobersonLab/hidradenitis_suppurativa_variants
RobersonLab/ilmn_format_converter
C++ method to convert ILMN+64 files between SCARF and FASTQ formats.
RobersonLab/paired_end_demux
Illumina FASTQ files as input and splits into individual indexed samples.
RobersonLab/phage_ngs_fastq_translator
RobersonLab/RobersonLab.github.io
Lab static site
RobersonLab/single_end_demux
Python script for demultiplexing single-end sequencing into individual FASTQ files by index.
RobersonLab/wustl_ris_docker_image_builds
RobersonLab/wustl_ris_snakemake_setup
RobersonLab/zotero_csl_bib_files
Repository of CSL files to use in Zotero for specific journals / uses.