RobertoRun/vcf-tab-to-fasta

gaps not written

Opened this issue · 0 comments

missing data in the input tab file (./.) are not written as gaps in the output.

To correct, change line 150 in vcf_tab_to_fasta_alignment.pl from:
} elsif ($nuc eq './')

to:

} elsif ($nuc eq './.')


Cheers,
Andrej
PS: nice program, thanx :)

Original issue reported on code.google.com by aben...@gmail.com on 9 Dec 2014 at 4:15