Robin-Rounthwaite

Pinned Repositories

plot-cactus-alignment-depth
Plotting was originally built for comparing cactus and dipcall alignments between the reference and a set of given assemblies. Edit and run plot_alignment_depth.py to make plots.
Language:Python10
reference-based-cactus-aligner
Faster than an all-to-all alignment for constructing cactus graphs. Starts by aligning all sequences to the reference. All the sequences that align poorly (or not at all) to the reference are then re-aligned to all the non-reference sequence.
Language:Python10
vg
tools for working with genome variation graphs
Language:C++10
cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C00
cactus-connectivity
Determines how well-connected a .hal cactus graph file is by measuring how many bases are involved in alignments between each assembly in the graph.
Language:Python00
DelayDifferentialEqnSimulator
A generic library for simulating networks of ordinary and delay differential equations for systems modeling
Language:C++00
graph-genomics-review
Precision pangenomics (review article on graph genomics)
Language:TeX00
Kinase-Consensus-Search
Finds and annotates putative kinase consensus sites in yeast proteins.
Language:Python00
Python
All of my projects created in Python
Language:Python00
snarl-normalizer-scripts
Various scripts used during the construction and analysis of the vg normalize command.
Language:C++00

Robin-Rounthwaite's Repositories

Robin-Rounthwaite/vg
tools for working with genome variation graphs
Language:C++1
Robin-Rounthwaite/snarl-normalizer-scripts
Various scripts used during the construction and analysis of the vg normalize command.
Language:C++
Robin-Rounthwaite/cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C
Robin-Rounthwaite/reference-based-cactus-aligner
Faster than an all-to-all alignment for constructing cactus graphs. Starts by aligning all sequences to the reference. All the sequences that align poorly (or not at all) to the reference are then re-aligned to all the non-reference sequence.
Language:Python1
Robin-Rounthwaite/plot-cactus-alignment-depth
Plotting was originally built for comparing cactus and dipcall alignments between the reference and a set of given assemblies. Edit and run plot_alignment_depth.py to make plots.
Language:Python1
Robin-Rounthwaite/cactus-connectivity
Determines how well-connected a .hal cactus graph file is by measuring how many bases are involved in alignments between each assembly in the graph.
Language:Python
Robin-Rounthwaite/Python
All of my projects created in Python
Language:Python
Robin-Rounthwaite/graph-genomics-review
Precision pangenomics (review article on graph genomics)
Robin-Rounthwaite/DelayDifferentialEqnSimulator
A generic library for simulating networks of ordinary and delay differential equations for systems modeling
Language:C++
Robin-Rounthwaite/Kinase-Consensus-Search
Finds and annotates putative kinase consensus sites in yeast proteins.
Language:Python