This repository provides code for a research project using Boolean algorithms to identify genes associated with with neutrophil counts.
Here is a brief summary of the files included:
- Neutrophil Analysis.ipynb: Notebook containing analysis and code to reproduce figures
- ViolinPlot.py: library for generating specialized plots
- neuAnalysis.py: script to load datasets used and analyze gene expression data (microarray and RNA-sequencing)
- percentile.cpp: efficiently calculate percentile expression scores for a gene
To run the code, please install our lab softwares Hegemon and BoNE. The datasets analyzed can also be explored online in our database of over 30 neutrophil datasets.
A manuscript is under preparation and this computational analysis was used for a Curebound grant currently under review.