Pinned Repositories
agrum
Alignment of reads on Graphs Using Minimap2
Alice-asm
bioconda-recipes
Conda recipes for the bioconda channel.
BRAW
Box of not RelAted Work
BubbleCrush
Crushes simple bubbles in GFA
cloudClassifier
Improves the taxonomic assignment of reads using barcode information for linked-reads data
GenomeTailor
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
Hairsplitter
Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
strainMiner
separating strains in metagenomic assemblies using ILP
RolandFaure's Repositories
RolandFaure/Hairsplitter
Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
RolandFaure/GenomeTailor
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
RolandFaure/QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
RolandFaure/strainMiner
separating strains in metagenomic assemblies using ILP
RolandFaure/agrum
Alignment of reads on Graphs Using Minimap2
RolandFaure/Alice-asm
RolandFaure/bioconda-recipes
Conda recipes for the bioconda channel.
RolandFaure/BRAW
Box of not RelAted Work
RolandFaure/BubbleCrush
Crushes simple bubbles in GFA
RolandFaure/cloudClassifier
Improves the taxonomic assignment of reads using barcode information for linked-reads data
RolandFaure/compute_coverage
Small script to compute coverage of contigs from reads
RolandFaure/GFA_polish
Small repository of command lines to polish a GFA assembly
RolandFaure/IDBA-to-GFA
RolandFaure/racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
RolandFaure/reconstitute_miniasm_contigs
Small python script to reconstitute contigs from the 'a' lines of the miniasm output
RolandFaure/RolandFaure.github.io