Romain-Laine
Biophysicist at heart. Doing advanced microscopy and image analysis!
University College LondonLondon, UK
Pinned Repositories
3D_designs
This repository is a placeholder for designs of 3D printed parts (STL files). Some were made with Alibre Pro and some were made with OpenSCAD. When OpenSCAD was used, I share the codes, these can be easily modified for own purposes.
F3-CMM-FLIM-analysis
This ImageJ macro code provides a fast and robust way to analyse FLIM (TCSPC) image data in ImageJ (or FiJi). The method is based on an extension of the centre-of-mass method (CMM) which uses the first moment to estimate the lifetime from a decay.
ijMovie
ipls-workshop
Setup instructions for the IPLS workshop April 2021
MiLeSIM
This code performs the particle detection, classification (Machine Learning analysis) and structural analysis of virus imaging dataset as described in our manuscript.
Model_based_analysis_virus_particles
NanoJ-SQUIRREL
SQUIRREL software package
opencl-decon
Deconvolution in ImageJ via OpenCL [UNMAINTAINED]
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
TCSPC-image-simulation
This code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.
Romain-Laine's Repositories
Romain-Laine/TCSPC-image-simulation
This code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.
Romain-Laine/ijMovie
Romain-Laine/3D_designs
This repository is a placeholder for designs of 3D printed parts (STL files). Some were made with Alibre Pro and some were made with OpenSCAD. When OpenSCAD was used, I share the codes, these can be easily modified for own purposes.
Romain-Laine/F3-CMM-FLIM-analysis
This ImageJ macro code provides a fast and robust way to analyse FLIM (TCSPC) image data in ImageJ (or FiJi). The method is based on an extension of the centre-of-mass method (CMM) which uses the first moment to estimate the lifetime from a decay.
Romain-Laine/MiLeSIM
This code performs the particle detection, classification (Machine Learning analysis) and structural analysis of virus imaging dataset as described in our manuscript.
Romain-Laine/ipls-workshop
Setup instructions for the IPLS workshop April 2021
Romain-Laine/Model_based_analysis_virus_particles
Romain-Laine/NanoJ-SQUIRREL
SQUIRREL software package
Romain-Laine/opencl-decon
Deconvolution in ImageJ via OpenCL [UNMAINTAINED]
Romain-Laine/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
Romain-Laine/UC2-GIT
Respository for Open-Science modular microscope system.
Romain-Laine/ZCDL4_binder