Rongtingting

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

CNV_calling_Benchmark

Benchmarking records for scRNA-seq CNV detection.

PTM-X

PTM-X: a prediction tool for Post-Translational Modification cross-talk

ReadingNotes

你今天读论文了吗

TensorFlow-Bayes

Examples of TensorFlow for Bayesian inference

xclone-data

XCLONE DATA

XClone-test

Inference of clonal Copy Number Variation in single cells

xcltk

Toolkit for XClone (warning: under development, not stable)

XClone

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

SingleCell-Workshop-2021

Module 4 for HKU Single-cell Workshop

Rongtingting/ReadingNotes

你今天读论文了吗

Rongtingting/xclone-data

XCLONE DATA

Rongtingting/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Rongtingting/CNV_calling_Benchmark

Benchmarking records for scRNA-seq CNV detection.

Rongtingting/PTM-X

PTM-X: a prediction tool for Post-Translational Modification cross-talk

Rongtingting/TensorFlow-Bayes

Examples of TensorFlow for Bayesian inference

Rongtingting/XClone-test

Inference of clonal Copy Number Variation in single cells

Rongtingting/xcltk

Toolkit for XClone (warning: under development, not stable)

Rongtingting/XLearning

X Learning.

Rongtingting/academic-kickstart

Easily create a beautiful website using Academic and Hugo

Rongtingting/Alleloscope

Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.

Rongtingting/CaSpER

Rongtingting/cellcutter

Create thumbnails of cells in a given image.

Rongtingting/chisel

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

Rongtingting/copykat

Rongtingting/dragonstar2019

Rongtingting/glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

Rongtingting/hilearn

A small library of machine learning methods and data visualization plots

Rongtingting/HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Rongtingting/machine-learning-notes

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接

Rongtingting/Rongtingting

Rongtingting/Rongtingting.github.io

Rongting's pages

Rongtingting/RT_CodeLib

CodeLib for daily usage.

Rongtingting/scAlleleCount

calculate alt count/coverage count | original from Nikolas Barkas

Rongtingting/scCNVSim

Simulation of somatic CNVs in single cells

Rongtingting/scQTLib

single-cell quantitative trait (locus) analysis library

Rongtingting/scvelo

RNA Velocity generalized through dynamical modeling

Rongtingting/SnapATAC2

Single-cell epigenomics analysis tools

Rongtingting/vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference

Rongtingting/Visualization

Source or useful info for visualization and presentation.