Rostlab/LocText

Issues

• BINF-D-17-00305R2

  #41 opened 6 years ago by juanmirocks
  0

• Address review: BINF-D-17-00305-R1

  #39 opened 7 years ago by juanmirocks
  0

• LocText throws error

  #40 opened 7 years ago by dedmari
  1

• Write paper

  #9 opened 7 years ago by juanmirocks
  3

• ‼️ Write STRINGTagger in python LocText code

  #8 opened 7 years ago by juanmirocks
  3

• Profile code to speed it up

  #17 opened 7 years ago by juanmirocks
  3

• Explore Different Sentece Models and achieve F1 > 80

  #34 opened 7 years ago by juanmirocks
  0

• State-Of-The-Art in RE -- Reading Material

  #31 opened 7 years ago by juanmirocks
  1

• Update annotations in tagtog & PubAnnotation

  #25 opened 8 years ago by juanmirocks
  0

• ‼️Assess performance against PubMed documents

  #32 opened 7 years ago by juanmirocks
  11

• ‼️ Calculate ner - performance differences in LocText branches (develop, feature/speed_up_relation_pipeline)

  #38 opened 7 years ago by MadhukarSP
  4

• ‼️ Compare against LocTree results

  #36 opened 7 years ago by juanmirocks
  2

• ‼️Calculate ner performance of StringTagger

  #37 opened 7 years ago by juanmirocks
  4

• Review choice of Tokenizer

  #26 opened 7 years ago by juanmirocks
  1

• Use spacy sentence splitter

  #29 opened 7 years ago by juanmirocks
  0

• Cellular Components that are also Molecular Functions

  #33 opened 7 years ago by juanmirocks
  1

• Query UniProt programmatically to get info

  #35 opened 7 years ago by juanmirocks
  1

• ‼️Prepare data for final manual evaluation

  #22 opened 7 years ago by juanmirocks
  4

• ‼️ Impl. Converter from STRING id to UniProt ID

  #19 opened 7 years ago by juanmirocks
  7

• ‼️Create STRING tagger Docker with dics & uniprot ids mapping

  #23 opened 7 years ago by juanmirocks
  17

• ‼️Fill in missing normalizations in interFile_modified.tsv file

  #27 opened 7 years ago by juanmirocks
  23

• ‼️Crush the Baseline

  #11 opened 7 years ago by juanmirocks
  19

• Figure out how to print & submit PhD Thesis

  #18 opened 7 years ago by juanmirocks
  1

• ‼️ Convert DS model

  #6 opened 7 years ago by juanmirocks
  2

• ‼️ Do feature selection with IG (Information Gain) and Avg

  #16 opened 7 years ago by juanmirocks
  3

• ‼️Try other ml classifiers

  #30 opened 7 years ago by juanmirocks
  0

• Easy-fix wrong spacy multiple roots

  #28 opened 7 years ago by juanmirocks
  0

• Count number of relations in relna/LocText corpus

  #24 opened 7 years ago by MadhukarSP
  1

• ‼️ 📚 Reading Material

  #21 opened 8 years ago by juanmirocks
  3

• ‼️ Put normalizations written in PubAnnotation format back to tagtog

  #2 opened 8 years ago by juanmirocks
  6

• ‼️ Implement general evaluator

  #20 opened 8 years ago by juanmirocks
  2

• At the end, train on whole LocText corpus

  #7 opened 8 years ago by juanmirocks
  1

• Cross-run relna & Loctext against their respective corpora

  #15 opened 8 years ago by juanmirocks
  1

• Implement original LocText features

  #5 opened 8 years ago by juanmirocks
  5

• Too many parsers

  #13 opened 8 years ago by juanmirocks
  2

• Run original java code to check balance of pos. vs neg. instances

  #14 opened 8 years ago by juanmirocks
  1

• Verify Possible Difference in Tokenization & Sentence Splitting

  #10 opened 8 years ago by MadhukarSP
  2

• Verify whether to use SVMLight TK or not

  #12 opened 8 years ago by juanmirocks
  2

• General Issue (email to collaborators)

  #3 opened 8 years ago by juanmirocks
  1

• Create tagger using nalaf

  #4 opened 8 years ago by juanmirocks
  1

• Put normalizations written in PubAnnotation format back to tagtog

  #1 opened 8 years ago by juanmirocks
  1