Change the pass of NCBI BLAST
kokitsuyuzaki opened this issue · 0 comments
kokitsuyuzaki commented
Hi,
Your Dockerfile of LocTree3 in README.md may not work properly, because of change the pass of NCBI BLAST.
I changed the Dockerfile as follows and "docker build" ran successfully, though I don't know this make LocTree3 analyze real data properly.
FROM ubuntu:14.04
RUN apt-get -y update && apt-get install -y wget unzip automake make libconfig-inifiles-perl pp-popularity-contest
RUN wget -q https://github.com/Rostlab/LocTree3/archive/develop.zip && unzip -q develop.zip
RUN cd LocTree3-develop && aclocal && autoconf && autoheader; automake --add-missing && ./configure && make && make install
RUN wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables//blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz && tar xf ncbi-blast-2.7.1+-x64-linux.tar.gz
RUN /bin/echo -e "[NCBI]\nData=/ncbi-blast-2.7.1+/data/" > ~/.ncbirc && /bin/echo -e "export PATH=$PATH:/ncbi-blast-2.7.1+/bin" >> ~/.bashrc