Pinned Repositories
affinewarp
An implementation of piecewise linear time warping for multi-dimensional time series alignment
allenCCF
Tools to work with Allen Inst CCF data in matlab
AMaSiNe
autoRM
an automatic toolkit for mouse retinotopic mapping
BrainSpace
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
DeepAction
Toolbox for classification of animal behavior in video
dsMap
MATLAB functions to analysis direction and orientation selectivity
sciColorMap
MATLAB colormaps for scientific data representation
RuixLi's Repositories
RuixLi/sciColorMap
MATLAB colormaps for scientific data representation
RuixLi/dsMap
MATLAB functions to analysis direction and orientation selectivity
RuixLi/affinewarp
An implementation of piecewise linear time warping for multi-dimensional time series alignment
RuixLi/allenCCF
Tools to work with Allen Inst CCF data in matlab
RuixLi/AMaSiNe
RuixLi/autoRM
an automatic toolkit for mouse retinotopic mapping
RuixLi/BrainSpace
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
RuixLi/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
RuixLi/CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
RuixLi/DeepAction
Toolbox for classification of animal behavior in video
RuixLi/DeepCAD-RT
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
RuixLi/export_fig
A MATLAB toolbox for exporting publication quality figures
RuixLi/facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
RuixLi/faceMov
extract animal movement using svd decomposition
RuixLi/matlab-schemer
Apply and save color schemes in MATLAB with ease.
RuixLi/matlab_elastix
MATLAB Elastix wrapper
RuixLi/Mouse_WOI
Mouse wide-field optical imaging processing toolbox
RuixLi/NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
RuixLi/npy-matlab
Experimental code to read/write NumPy .NPY files in MATLAB
RuixLi/nrrd-matlab
MATLAB code to read and write nrrd file
RuixLi/Pytorch-UNet
PyTorch implementation of the U-Net for image semantic segmentation with high quality images
RuixLi/rastermap
a visualization method for neural data
RuixLi/retinotopic_mapping
visual display and analysis python code for retinotopic mapping of rodent visual cortex
RuixLi/Starburst
Open source eye tracking algorithm
RuixLi/suite2p
cell detection in calcium imaging recordings
RuixLi/suite2p-matlab
Tools for processing 2P recordings
RuixLi/tif-matlab
A wrapper packge to read and write multi-page tif or tiff files with MATLAB.
RuixLi/wfield
Tools to process widefield data
RuixLi/WidefieldImager
Pre-processing pipeline for widefield data
RuixLi/yaml-matlab
MATLAB YAML parser and emitter based on SnakeYAML