Runsheng
We are hiring PhD students in bioinformatics! Check https://lrslab.github.io/contact/
CityU HKHong Kong
Pinned Repositories
bioinformatics_scripts
bioinformatics scripts written in python or R
lastchain
Lastal and chain
LR_toolkit
Long read python processing tools
methyutils
scripts to process methylation calls
mitovar
Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.
primerdiffer
Design specific primers genome-widely.
primervcf
primderdiffer submodule: primervcf
sspace_longread
The modified version of sspac_longread.pl, add compatibility with blasr5.x
trackcluster
An analysis pipeline for Nanopore direct-RNA sequencing
Runsheng's Repositories
Runsheng/trackcluster
An analysis pipeline for Nanopore direct-RNA sequencing
Runsheng/primerdiffer
Design specific primers genome-widely.
Runsheng/primervcf
primderdiffer submodule: primervcf
Runsheng/bioinformatics_scripts
bioinformatics scripts written in python or R
Runsheng/mitovar
Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.
Runsheng/sspace_longread
The modified version of sspac_longread.pl, add compatibility with blasr5.x
Runsheng/lastchain
Lastal and chain
Runsheng/LR_toolkit
Long read python processing tools
Runsheng/methyutils
scripts to process methylation calls
Runsheng/3d-dna
3D de novo assembly (3D DNA) pipeline
Runsheng/awesome-nanopore
A curated list of awesome nanopore analysis tools.
Runsheng/bioconda-recipes
Conda recipes for the bioconda channel.
Runsheng/c24genome
c24 genome track for ucsc
Runsheng/cbgenome
The C. briggsae gemome and annotation files
Runsheng/cbtrack
C. briggsae mapping tracks
Runsheng/hammer9
This project is designed to find the potential modification sites.
Runsheng/lab
Lab simple pages
Runsheng/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Runsheng/nanogan
A nanopore read simulator with GAN
Runsheng/nanotrack
track for nanopore
Runsheng/nvidia-fan-control
Controlling Nvidia GPU fan speed on a headless linux computer
Runsheng/pararun
pararun is a python package to generate and run bash scripts for parallel or iterative jobs.
Runsheng/Porechop
adapter trimmer for Oxford Nanopore reads
Runsheng/pyssw
pyssw: python wrapper for Smith-Waterman Python Module
Runsheng/rosalind
rosalind codes
Runsheng/runsheng.github.io
My website pages
Runsheng/tair10
a ucsc track hub for tair10 genome
Runsheng/taiyaki
Training models for basecalling Oxford Nanopore reads
Runsheng/vimrc
My .vimrc file on server
Runsheng/z
z - jump around