Pinned Repositories
.github
DataTidyGelaDURT
Gela (2022) datasets
DataTidyMusvosviTCRseq
Raw data underlying figures in Musvosvi et al T cell receptor repertoires associated with control and disease progression following Mycobacterium tuberculosis infection
projr
Streamline R projects
ReportGelaDURT
Gela (2022) analyses and figures
SATVI_ComputationalCourse
This repository contains all materials needed for the SATVI Computational Course. These resources are version-controlled, living documents that will be updated as needed as the course progresses.
UtilsCompassSV
Utility functions to plot and work with COMPASS output
UtilsCytoRSV
UtilsDataRSV
Facilitate data pre-processing
UtilsGGSV
Utility functions for ggplot2
SATVI, University of Cape Town's Repositories
SATVILab/DataTidyMusvosviTCRseq
Raw data underlying figures in Musvosvi et al T cell receptor repertoires associated with control and disease progression following Mycobacterium tuberculosis infection
SATVILab/projr
Streamline R projects
SATVILab/.github
SATVILab/DataTidyGelaDURT
Gela (2022) datasets
SATVILab/ReportGelaDURT
Gela (2022) analyses and figures
SATVILab/SATVI_ComputationalCourse
This repository contains all materials needed for the SATVI Computational Course. These resources are version-controlled, living documents that will be updated as needed as the course progresses.
SATVILab/UtilsCompassSV
Utility functions to plot and work with COMPASS output
SATVILab/UtilsCytoRSV
SATVILab/UtilsDataRSV
Facilitate data pre-processing
SATVILab/UtilsGGSV
Utility functions for ggplot2
SATVILab/actions
GitHub Actions repo
SATVILab/CompACSCyTOFTCells
SATVILab/CompTemplate
SATVILab/CompTemplateR
Template repository for multi-repo setups using R
SATVILab/DataTidy19RodoVaccComp
Processing raw data for Rodo (2019) PLOS Pathogens paper
SATVILab/DirectoryGitHubPublic
Directory of public SATVI projects and packages
SATVILab/dotfiles
Config and commands for HPC and GitHub codespaces
SATVILab/dotfiles_old
Dotfiles, containing config and commands for the HPC and GitHub Codespaces
SATVILab/M72_CITEseqHIVE_scRNAseq_Pipeline
SATVILab/Masters-Thesis-
All code pertaining to my masters thesis which investigates the effects of two subunit vaccines H1:IC31 and H56:IC31 as well as prior M.tb sensitization on the immune responses of three cohorts of South African adolescents and adults.
SATVILab/Minor20220616TestMIMOSA2
Get MIMOSA2 up and running
SATVILab/ProjectTemplate
Template for non-code projects
SATVILab/rdsproject
Catalogues and validates projects on the research data server.
SATVILab/Template23MusvosviGatingSetToWsp
SATVILab/UtilsFaustSV
SATVILab/UtilsFlowSOMSV
SATVILab/UtilsQuartoRSV
Utility functions for Quarto documents
SATVILab/UtilsReportRSV