Pinned Repositories
RPxSuite
Identifies and clusters marker genes to delineate species groups in metagenomes
AMO_Archaea_2021
This repository contains all code for analysis performed in "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
Angelo2019_Paper
Code and Data for Analysis Performed in the Paper
AnnotateR
Takes and annotates raw metagenome bins for input into AnnoVisR
AnnoVisR
Visualize HMM annotations and test functional enrichment
BanfieldLabProjects
An index describing the public and private repositories that Banfield lab members can request access to.
ETsuite
Suite of Tools for ET-seq Informatic Workflow
ggHMM
HMM Annotation and Parsing for ggKbase
Kust_Cyano_2023
Code repo for "Model cyanobacterial consortia reveal a consistent core microbiome independent of inoculation source or cyanobacterial host species"
CoverM
Read coverage calculator for metagenomics
SDmetagenomics's Repositories
SDmetagenomics/ETsuite
Suite of Tools for ET-seq Informatic Workflow
SDmetagenomics/Angelo2019_Paper
Code and Data for Analysis Performed in the Paper
SDmetagenomics/AMO_Archaea_2021
This repository contains all code for analysis performed in "Soils and sediments host novel archaea with divergent monooxygenases implicated in ammonia oxidation"
SDmetagenomics/AnnotateR
Takes and annotates raw metagenome bins for input into AnnoVisR
SDmetagenomics/AnnoVisR
Visualize HMM annotations and test functional enrichment
SDmetagenomics/BanfieldLabProjects
An index describing the public and private repositories that Banfield lab members can request access to.
SDmetagenomics/ggHMM
HMM Annotation and Parsing for ggKbase
SDmetagenomics/Kust_Cyano_2023
Code repo for "Model cyanobacterial consortia reveal a consistent core microbiome independent of inoculation source or cyanobacterial host species"