Pinned Repositories
basic
Low-level shared SEED java library
dl4j.decision
Small DL4J library for RandomForest only
dl4j.jfx
Improved, JavaFX version of DL4J
dl4j.utils
Utility classes related to the dl4j family of products
genome.bins
Binning-related utilites
genome.survey
General utilities for processing genomes
ncbi.utils
Java Utilities for accessing NCBI
sample.utils
Utility commands related to annotated samples
shared
Shared SEED java library
web.rna
Web interface for RNA threonine project
SEED Toolkit's Repositories
SEEDtk/basic
Low-level shared SEED java library
SEEDtk/shared
Shared SEED java library
SEEDtk/dl4j.jfx
Improved, JavaFX version of DL4J
SEEDtk/genome.survey
General utilities for processing genomes
SEEDtk/kernel
SEEDtk/ncbi.utils
Java Utilities for accessing NCBI
SEEDtk/threonine
Utilities related to the Synthetic Biology project
SEEDtk/bins.generate
New Metagenome Binning Algorithm
SEEDtk/brc.parent
Master project for SEEDtk java modules used by BV-BRC
SEEDtk/core.utils
Weekly CoreSEED Utilities
SEEDtk/dl4j.clusters
Java command for unsupervised clustering
SEEDtk/dl4j.eval
Deep learning system for annotation consistency
SEEDtk/dl4j.run
Basic Deep Learning Application
SEEDtk/genome.align
Alignment utilities
SEEDtk/genome.blast
BLAST utilities for SEEDtk
SEEDtk/genome.changes
COmmands for comparing feature characteristics in genome sets
SEEDtk/genome.distance
Compute kmer distance between genomes
SEEDtk/genome.download
Commands for converting genomes to GTOs
SEEDtk/io.template
Text generation utilities
SEEDtk/kmers.anno
Kmer-based annotation engine
SEEDtk/kmers.hammer
Utilities for processing thor-hammers
SEEDtk/kmers.reps
Java module for representative genomes
SEEDtk/p3_binning
PATRIC Metagenome Binning Application
SEEDtk/p3_cli
PATRIC command line interface scripts
SEEDtk/p3_code
SEEDtk Fragment Shared with PATRIC
SEEDtk/p3api
Java library for PATRIC DATA API
SEEDtk/p3api.common
Useful PATRIC utilities
SEEDtk/rna.erdb
Maintenance and analysis utilities for the RNA Seq database
SEEDtk/rna.utils
Utilities for parsing and processing RNA expression data
SEEDtk/RnaSeqProjects
This is a combined repo that collects all the projects involved in the RnaSeq project.