TomoPy reconstruction scripts, notebooks and examples for the ID10-BEATS beamline of SESAME.
Datasets for running the tests can be found on the TomoBank
| Notebook | Description | Binder URL |
|---|---|---|
| BEATS_recon.ipynb | Standard reconstruction |  |
| BEATS_recon-phase.ipynb | Phase retrieval | |
| convert360to180.ipynb | Extended field-of-view | |
Activate TomoPy reconstruction environment
conda activate tomopy
Lanuch Jupyter Notebook or Jupyter Lab
jupyter notebook
jupyter lab
Add and activate a TomoPy kernel in Jupyter:
Note
You probably don't need this.
- Check and activate the environment where ipython is living
conda env list
source activate base
Install TomoPy kernel in it
python -m ipykernel install --user --name tomopy --display-name "conda (tomopy_source)"