SPMIC

The Sir Peter Mansfield Imaging Centre

The University of Nottingham

Pinned Repositories

3T_MRI_harmonisation
Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
Language:Jupyter Notebook12
BRC_Pipeline
The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.
Language:Shell142
cudimot
CUDA Diffusion Modelling Toolbox
Language:Cuda51
EDDEN
Language:Jupyter Notebook20
MRS_MRI_libs
Contains libraries for reading, writing and analysing Magnetic Resonance Spectroscopy and Imaging (MRS & MRI) data.
Language:MATLAB00
ON-Harmony_UKBB_pipeline
Cross-scanner version of UK-Biobank Pipeline (v1)
Language:Shell3 10 00
xnat-dicomqc
XNAT container script to do simple configurable tag-based QC on scan DICOMs
Language:Python21
xtract
Language:Shell1 2 02
XTRACT_atlases
WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque brain.
124
XTRACT_Macaque_MultiTemplate
XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).
10

SPMIC's Repositories

SPMIC-UoN/BRC_Pipeline
The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.
Language:Shell142
SPMIC-UoN/cudimot
CUDA Diffusion Modelling Toolbox
Language:Cuda51
SPMIC-UoN/ON-Harmony_UKBB_pipeline
Cross-scanner version of UK-Biobank Pipeline (v1)
Language:Shell3 10 00
SPMIC-UoN/EDDEN
Language:Jupyter Notebook20
SPMIC-UoN/xnat-dicomqc
XNAT container script to do simple configurable tag-based QC on scan DICOMs
Language:Python21
SPMIC-UoN/3T_MRI_harmonisation
Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
Language:Jupyter Notebook12
SPMIC-UoN/xnat-imgqc
XNAT container plugin to generate generic image-based QC metrics
Language:Python1
SPMIC-UoN/xtract
Language:Shell1 2 02
SPMIC-UoN/XTRACT_Macaque_MultiTemplate
XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).
10
SPMIC-UoN/NFacT
Non-negative matrix Factorisation of Tractography data
Language:Shell01
SPMIC-UoN/rodent_anat
Anatomical pipeline for rodent MRI based on fsl_anat interface
Language:Python0 2 00
SPMIC-UoN/brightmind_pipeline
Procesing pipeline of BRIGhTMIND trial
Language:MATLAB
SPMIC-UoN/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
Language:Python
SPMIC-UoN/BWAS_IPF
Brain-Wide Association Study (BWAS) to find the association between brain imaging-derived phenotypes and idiopathic pulmonary fibrosis genetic risk
SPMIC-UoN/cmore_pipeline
Analysis pipeline for CMORE data
Language:Python
SPMIC-UoN/conilab
Computational Neuroimaging Lab Website
Language:SCSS2
SPMIC-UoN/deltab
Implementation of brain age prediction from Smith et al 2019
Language:Python
SPMIC-UoN/demistifi_scripts
Processing scripts for DEMISTIFI
Language:Python
SPMIC-UoN/fdt
Language:C++
SPMIC-UoN/fproc
Base for simple processing pipelines
Language:Python
SPMIC-UoN/fsort
File sorter for pipeline preprocessing
Language:Python2 0
SPMIC-UoN/migtools
Scripts to help handle MIG partitions of NVIDIA GPUs
Language:Python
SPMIC-UoN/parkinsons_pipeline
Language:MATLAB
SPMIC-UoN/PSO_code
Particle Swarm Optimisation code to fit CEST spectra
Language:C
SPMIC-UoN/trkvis
Simple tractography visualisation tool
Language:Python
SPMIC-UoN/usefultools
Useful tools for public sharing
Language:Shell
SPMIC-UoN/xnat-autorun
Script to automatically run a command on all sessions in a project
Language:Python
SPMIC-UoN/xnat-nott
Simple XNAT helpers based around Nottingham applications
Language:Python
SPMIC-UoN/xtract_data
Language:HTML
SPMIC-UoN/xtract_divergence