SPPearce
Bioinformatician/Mathematician, working at NeoGenomics. Nextflow Ambassador and member of the nf-core Maintainers team.
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
CompoundMatrixMethod
Solving boundary-value eigenvalue problems in Mathematica using the Compound Matrix Method to calculate the Evans function
configs
Config files used to define parameters specific to compute environments at different Institutions
manchester_papers
Test repo for pull requests
methylaction
Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-co.re
Code and files for the main nf-core website.
NGSCheckMate
Software program for checking sample matching for NGS data
SPPearce's Repositories
SPPearce/CompoundMatrixMethod
Solving boundary-value eigenvalue problems in Mathematica using the Compound Matrix Method to calculate the Evans function
SPPearce/NGSCheckMate
Software program for checking sample matching for NGS data
SPPearce/bioconda-recipes
Conda recipes for the bioconda channel.
SPPearce/BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
SPPearce/configs
Config files used to define parameters specific to compute environments at different Institutions
SPPearce/manchester_papers
Test repo for pull requests
SPPearce/methylaction
Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
SPPearce/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
SPPearce/multi-package-containers
Testing building mulled containers for multi-requirement tools.
SPPearce/nf-co.re
Code and files for the main nf-core website.
SPPearce/PacletServer
A paclet server for Mathematica
SPPearce/plyranges
A grammar of genomic data transformation
SPPearce/qsea
QSEA bioconductor package
SPPearce/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
SPPearce/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
SPPearce/test
SPPearce/test-datasets
Test data to be used for automated testing with the nf-core pipelines
SPPearce/website
Nextflow public web site