SaaaaiDing

SaaaaiDing's Stars

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python49972

• lucidrains/se3-transformer-pytorch

  Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.

  Language:Python25723

• divelab/AIRS

  Artificial Intelligence Research for Science (AIRS)

  Language:Python51259

• datvodinh/latent-diffusion-model

  Simple Implementation of Stable Diffusion from scratch

  Language:Python2

• drorlab/atom3d

  ATOM3D: tasks on molecules in three dimensions

  Language:Python30435

• anton-bushuiev/PPIRef

  Dataset and package for working with protein-protein interactions in 3D

  Language:Jupyter Notebook828

• CarbonMatrixLab/carbonnovo

  Language:Python8

• zhanghaicang/carbonmatrix_public

  Language:Python9412

• alexechu/protpardelle

  Language:Python663

• JocelynSong/IsEM-Pro

  Language:Python7

• JocelynSong/SurfPro

  Language:Python9

• LeiLiLab/EnzyGen

  Language:Python203

• ProteinDesignLab/protpardelle

  Diffusion-based all-atom protein generative model.

  Language:Python16214

• aim-uofa/VFN

  [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".

  Language:Python222

• EDAPINENUT/GeoAB

  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)

  Language:Python328

• test-time-training/ttt-lm-pytorch

  Official PyTorch implementation of Learning to (Learn at Test Time): RNNs with Expressive Hidden States

  Language:Python1k58

• labmlai/annotated_deep_learning_paper_implementations

  🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

  Language:Python55.8k5.7k

• CompVis/stable-diffusion

  A latent text-to-image diffusion model

  Language:Jupyter Notebook68.2k10.1k

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.4k173

• maziarraissi/PINNs

  Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations

  Language:Python3.8k1.3k

• thuml/Time-Series-Library

  A Library for Advanced Deep Time Series Models.

  Language:Python6.8k1.1k

• t7morgen/misato-dataset

  Language:Jupyter Notebook16817

• gcorso/torsional-diffusion

  Implementation of Torsional Diffusion for Molecular Conformer Generation (NeurIPS 2022)

  Language:Python25546

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python13k1.1k

• Blealtan/efficient-kan

  An efficient pure-PyTorch implementation of Kolmogorov-Arnold Network (KAN).

  Language:Python4k359

• nrbennet/dl_binder_design

  Language:Python23556

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.7k338

• Wang-Lin-boop/AutoMD

  Easy to get started with molecular dynamics simulation.

  Language:Shell385

• Wang-Lin-boop/CADD-Scripts

  Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta

  Language:Shell5721

• msaveski/www_personal

  Personal Webpage

  Language:HTML236109