Sage Bionetworks Challenges
Sage Bionetworks hosts crowdsourcing challenges that examine questions in biology and medicine.
Pinned Repositories
brats2023
BraTS 2023+ Infrastructure
data-to-model-challenge-workflow
This repository will contain data-to-model challenge workflows
ehr-dream-challenges
Example models to submit to the EHR DREAM Challenges
ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools
Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge
model-to-data-challenge-workflow
This repository will contain model to data challenge workflows
Multiple-Myeloma-Challenge-Examples
NCI-CPTAC-DREAM-Proteogenomics-Challenge
orca-evaluation-templates
Templates for creating evaluation scripts to be plugged into the Synapse ORCA workflow.
sample-model-templates
Templates for creating a Docker model submission on Synapse.
SMC-RNA-Challenge
Sage Bionetworks Challenges's Repositories
Sage-Bionetworks-Challenges/NCI-CPTAC-DREAM-Proteogenomics-Challenge
Sage-Bionetworks-Challenges/brats2023
BraTS 2023+ Infrastructure
Sage-Bionetworks-Challenges/cnb-tools
Convenience tools/functions for challenges and benchmarking on Synapse.org
Sage-Bionetworks-Challenges/TB-DREAM-Challenge-Infra
Sage-Bionetworks-Challenges/brats-dream-challenge-infra
BraTS DREAM Challenge (2021, 2022) - infrastructure
Sage-Bionetworks-Challenges/Bridge2AI-shiny
Sage-Bionetworks-Challenges/Enclave-Challenge-Toolkit
A suite of tools to manage challenges that are run external to Synapse but still use some of the Synapse functionality.
Sage-Bionetworks-Challenges/Multi-seq-Data-Analysis-DREAM-Challenge-Infra
Sage-Bionetworks-Challenges/Multi-seq-Data-Analysis-Post-Analysis
Post-hoc analysis for scRNA-seq and scATAC-seq Data Analysis DREAM Challenge
Sage-Bionetworks-Challenges/sample-model-templates
Templates for creating a Docker model submission on Synapse.
Sage-Bionetworks-Challenges/challenge-analysis
A template project for challenge analysis in R and Python
Sage-Bionetworks-Challenges/data-to-model-challenge-workflow
This repository will contain data-to-model challenge workflows
Sage-Bionetworks-Challenges/model-to-data-challenge-workflow
This repository will contain model to data challenge workflows
Sage-Bionetworks-Challenges/orca-evaluation-templates
Templates for creating evaluation scripts to be plugged into the Synapse ORCA workflow.
Sage-Bionetworks-Challenges/writeup-workflow
This repository will contain the workflows to validate and archive writeups
Sage-Bionetworks-Challenges/BraTs-Validate-Users
Tool to monitor Google Form responses collected in a Google Sheet
Sage-Bionetworks-Challenges/challenge-portal-wizard
Shiny app for creating a new challenge on the new Synapse Challenge Platform
Sage-Bionetworks-Challenges/Dynamic-AI-Challenge-Legacy-Orchestrator-Infra
Sage-Bionetworks-Challenges/finrisk-challenge-infra
Sage-Bionetworks-Challenges/md_test_challenge-infrst
Onboarding training activity fr data-to-model-challenge-workflow
Sage-Bionetworks-Challenges/MIDI-B-De-identification
Sage-Bionetworks-Challenges/mod-microbiome-2022
Preterm Birth Prediction - Microbiome DREAM Challenge (2022)
Sage-Bionetworks-Challenges/multi-seq-challenge-example-models
Sage-Bionetworks-Challenges/Multi-seq-Data-Analysis-Baseline
Baseline model for scRNA-seq and scATAC-seq Data Analysis Dream Challenge
Sage-Bionetworks-Challenges/olfactory-mixtures-prediction
DREAM Olfactory Mixtures Prediction Challenge infrastrcture
Sage-Bionetworks-Challenges/pegs-evaluation
Evaluation scripts for the PEGS challenge
Sage-Bionetworks-Challenges/RARE-X-DREAM-baseline-model
A sample model for the RARE-X DREAM Challenge
Sage-Bionetworks-Challenges/RARE-X-DREAM-Challenge-Infra
RARE-X Challenge infrastructure (2023)
Sage-Bionetworks-Challenges/rare-x-post-analysis
Sage-Bionetworks-Challenges/TB-DREAM-Challenge-Writeups